Uses of Class
com.ibm.fhir.persistence.exception.FHIRPersistenceException

Packages that use FHIRPersistenceException

Package	Description
com.ibm.fhir.persistence
com.ibm.fhir.persistence.exception
com.ibm.fhir.persistence.helper
com.ibm.fhir.persistence.jdbc
com.ibm.fhir.persistence.jdbc.cache
com.ibm.fhir.persistence.jdbc.connection
com.ibm.fhir.persistence.jdbc.dao.api
com.ibm.fhir.persistence.jdbc.dao.impl
com.ibm.fhir.persistence.jdbc.derby
com.ibm.fhir.persistence.jdbc.domain
com.ibm.fhir.persistence.jdbc.dto
com.ibm.fhir.persistence.jdbc.exception
com.ibm.fhir.persistence.jdbc.impl
com.ibm.fhir.persistence.jdbc.postgres
com.ibm.fhir.persistence.jdbc.util
com.ibm.fhir.persistence.jdbc.util.type
com.ibm.fhir.persistence.payload
com.ibm.fhir.persistence.util
com.ibm.fhir.server.resources
com.ibm.fhir.server.spi.interceptor
com.ibm.fhir.server.spi.operation
com.ibm.fhir.server.util

Uses of FHIRPersistenceException in com.ibm.fhir.persistence

Methods in com.ibm.fhir.persistence that throw FHIRPersistenceException

Modifier and Type	Method	Description
void	FHIRPersistenceTransaction.begin()	Begin a new transaction on the current thread if a transaction is not started yet.
List<ResourceChangeLogRecord>	FHIRPersistence.changes(int resourceCount, Instant fromLastModified, Long afterResourceId, String resourceTypeName)	Fetch up to resourceCount records from the RESOURCE_CHANGE_LOG table
<T extends Resource> SingleResourceResult<T>	FHIRPersistence.createWithMeta(FHIRPersistenceContext context, T resource)	Stores a new FHIR Resource in the datastore.
default <T extends Resource> SingleResourceResult<T>	FHIRPersistence.delete(FHIRPersistenceContext context, Class<T> resourceType, String logicalId)	Deletes the specified FHIR Resource from the datastore.
void	FHIRPersistenceTransaction.end()	End the current thread's transaction.
default ResourceEraseRecord	FHIRPersistence.erase(EraseDTO eraseDto)	Erases part or a whole of a resource in the data layer
ResourcePayload	FHIRPersistence.fetchResourcePayloads(Class<? extends Resource> resourceType, Instant fromLastModified, Instant toLastModified, Function<ResourcePayload,Boolean> process)	Special function for high speed export of resource payloads.
OperationOutcome	FHIRPersistence.getHealth()	Returns an OperationOutcome indicating the current status of the persistence store / backend
FHIRPersistence	FHIRPersistenceFactory.getInstance()	Returns an instance of a concrete implementation of the FHIRPersistence interface.
FHIRPersistence	PropertyBasedFHIRPersistenceFactory.getInstance(Properties properties)
default FHIRPayloadPersistence	FHIRPersistenceFactory.getPayloadPersistence()	Returns an instance of a concrete implementation of the FHIRPayloadPersistence interface which may be used by FHIRPersistence implementations to handle storage and retrieval of FHIR resource payloads.
boolean	FHIRPersistenceTransaction.hasBegun()	Determine if the transaction status is currently active
<T extends Resource> MultiResourceResult<T>	FHIRPersistence.history(FHIRPersistenceContext context, Class<T> resourceType, String logicalId)	Retrieves all of the versions of the specified FHIR Resource.
<T extends Resource> SingleResourceResult<T>	FHIRPersistence.read(FHIRPersistenceContext context, Class<T> resourceType, String logicalId)	Retrieves the most recent version of a FHIR Resource from the datastore.
int	FHIRPersistence.reindex(FHIRPersistenceContext context, OperationOutcome.Builder operationOutcomeResult, Instant tstamp, List<Long> indexIds, String resourceLogicalId)	Initiates reindexing for either a specified list of index IDs, or a randomly chosen resource.
List<Long>	FHIRPersistence.retrieveIndex(int count, Instant notModifiedAfter, Long afterIndexId, String resourceTypeName)	Retrieves a list of index IDs available for reindexing.
MultiResourceResult<Resource>	FHIRPersistence.search(FHIRPersistenceContext context, Class<? extends Resource> resourceType)	Performs a search on the specified target resource type using the specified search parameters.
void	FHIRPersistenceTransaction.setRollbackOnly()	Modify the transaction associated with the current thread such that the only possible outcome of the transaction is to roll back the transaction.
Future<PayloadKey>	FHIRPersistence.storePayload(Resource resource, String logicalId, int newVersionNumber)	Offload payload storage to another provider.
<T extends Resource> SingleResourceResult<T>	FHIRPersistence.updateWithMeta(FHIRPersistenceContext context, T resource)	Updates an existing FHIR Resource by storing a new version in the datastore.
<T extends Resource> SingleResourceResult<T>	FHIRPersistence.vread(FHIRPersistenceContext context, Class<T> resourceType, String logicalId, String versionId)	Retrieves a specific version of a FHIR Resource from the datastore.

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.exception

Subclasses of FHIRPersistenceException in com.ibm.fhir.persistence.exception

Modifier and Type	Class	Description
class	FHIRPersistenceIfNoneMatchException	This exception is thrown when an IfNoneMatch precondition check fails and the server is configured to treat this as an error (412 Precondition Failed).
class	FHIRPersistenceNotSupportedException	Thrown for methods or features not yet fully implemented.
class	FHIRPersistenceProcessorException	Thrown when a failure is found processing search parameters.
class	FHIRPersistenceResourceDeletedException
class	FHIRPersistenceResourceNotFoundException
class	FHIRPersistenceVersionIdMismatchException	This exception class represents an occurrence of a mismatch between the version id in the resource json vs.

Methods in com.ibm.fhir.persistence.exception that return FHIRPersistenceException

Modifier and Type	Method	Description
FHIRPersistenceException	FHIRPersistenceException.withIssue(OperationOutcome.Issue... issues)
FHIRPersistenceException	FHIRPersistenceException.withIssue(Collection<OperationOutcome.Issue> issues)
FHIRPersistenceException	FHIRPersistenceProcessorException.withIssue(OperationOutcome.Issue... issues)
FHIRPersistenceException	FHIRPersistenceProcessorException.withIssue(Collection<OperationOutcome.Issue> issues)

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.helper

Methods in com.ibm.fhir.persistence.helper that throw FHIRPersistenceException

Modifier and Type	Method	Description
void	FHIRTransactionHelper.begin()	If a transaction has not yet been started on this thread, then start one.
void	FHIRTransactionHelper.commit()	If we previously started a transaction on this thread using this helper instance, then commit it now.
void	FHIRTransactionHelper.end()	Same as commit, but is preferred for readability because FHIRTransactionHelper.commit() will actually do a rollback if setRollbackOnly is called on the underlying transaction
FHIRPersistence	FHIRPersistenceHelper.getFHIRPersistenceImplementation()
FHIRPersistence	FHIRPersistenceHelper.getFHIRPersistenceImplementation(String factoryPropertyName)
FHIRPersistence	PersistenceHelper.getFHIRPersistenceImplementation()	Returns an appropriate FHIRPersistance implementation according to the current configuration.
FHIRPersistence	PersistenceHelper.getFHIRPersistenceImplementation(String factoryPropertyName)	Returns an appropriate FHIRPersistance implementation according to the current configuration.
boolean	FHIRTransactionHelper.hasBegun()	Find out if we're currently in a transaction
default boolean	PersistenceHelper.isValidFHIRPersistenceImplementation(String identifier)	Identifies if a FHIRPersistence implementation can be found by using the given identifier.
protected String	FHIRPersistenceHelper.retrieveFactoryClassName(String factoryPropertyName)	Retrieves the name of the factory class that should be instantiated for use by the server.
void	FHIRTransactionHelper.rollback()	If we previously started a transaction on this thread using this helper instance, then perform a rollback now; otherwise, set the transaction as 'rollback only' to prevent it from being committed later.
void	FHIRTransactionHelper.setRollbackOnly()	Mark the current transaction for rollback.

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc

Methods in com.ibm.fhir.persistence.jdbc that throw FHIRPersistenceException

Modifier and Type	Method	Description
FHIRPersistence	FHIRPersistenceJDBCFactory.getInstance()
static ResourceDAO	FHIRResourceDAOFactory.getResourceDAO(Connection connection, String adminSchemaName, String schemaName, FHIRDbFlavor flavor, FHIRPersistenceJDBCCache cache)	Construct a new ResourceDAO implementation matching the database type
static ResourceDAO	FHIRResourceDAOFactory.getResourceDAO(Connection connection, String adminSchemaName, String schemaName, FHIRDbFlavor flavor, TransactionSynchronizationRegistry trxSynchRegistry, FHIRPersistenceJDBCCache cache, ParameterTransactionDataImpl ptdi)	Construct a new ResourceDAO implementation matching the database type

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.cache

Methods in com.ibm.fhir.persistence.jdbc.cache that throw FHIRPersistenceException

Modifier and Type	Method	Description
static void	FHIRPersistenceJDBCCacheUtil.prefill(ResourceDAO resourceDAO, ParameterDAO parameterDAO, FHIRPersistenceJDBCCache cache)	Prefill the cache with constants already committed in the database

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.connection

Methods in com.ibm.fhir.persistence.jdbc.connection with type parameters of type FHIRPersistenceException

Modifier and Type	Method	Description
static <XT extends FHIRPersistenceException> XT	FHIRDbHelper.severe(Logger logger, XT fx, String errorMessage, Throwable cause)	Log the exception message here along with the cause stack.
static <XT extends FHIRPersistenceException> XT	FHIRDbHelper.severe(Logger logger, XT fx, Throwable cause)	Convenience function to log the cause of an exception about to be thrown.

Methods in com.ibm.fhir.persistence.jdbc.connection that throw FHIRPersistenceException

Modifier and Type	Method	Description
void	FHIRTestTransactionAdapter.begin()
void	FHIRUserTransactionAdapter.begin()	If a transaction has not yet been started on this thread, then start one.
protected void	FHIRDbConnectionStrategyBase.configure(Connection connection, String tenantId, String dsId)	Check with the transaction sync registry to see if this is the first time we've worked with this connection in the current transaction.
void	FHIRTestTransactionAdapter.end()
void	FHIRUserTransactionAdapter.end()	If we previously started a transaction on this thread using this helper instance, then commit it now.
(package private) <T> T	FHIRUserTransactionAdapter.func(Supplier<T> s)	Call the supplier function within a begin/end
protected Connection	FHIRDbConnectionStrategyBase.getConnection(DataSource datasource, String tenantId, String dsId)	Get a connection configured for the given tenant and datasourceId
boolean	FHIRTestTransactionAdapter.hasBegun()
boolean	FHIRUserTransactionAdapter.hasBegun()
void	FHIRTestTransactionAdapter.setRollbackOnly()
void	FHIRUserTransactionAdapter.setRollbackOnly()

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.dao.api

Methods in com.ibm.fhir.persistence.jdbc.dao.api that throw FHIRPersistenceException

Modifier and Type	Method	Description
int	ParameterDAO.acquireCodeSystemId(String codeSystemName)	Acquire and return the id associated with the passed code-system name.
int	ParameterDAO.acquireParameterNameId(String parameterName)	Acquire and return the id associated with the passed parameter name.
void	IResourceReferenceDAO.addNormalizedValues(String resourceType, Collection<ResourceTokenValueRec> xrefs, Collection<ResourceProfileRec> profileRecs, Collection<ResourceTokenValueRec> tagRecs, Collection<ResourceTokenValueRec> securityRecs)	Add TOKEN_VALUE_MAP records, creating any CODE_SYSTEMS and COMMON_TOKEN_VALUES as necessary
void	IResourceReferenceDAO.flush()	Execute any statements with pending batch entries
Integer	JDBCIdentityCache.getCanonicalId(String canonicalValue)	Get the database id for the given canonical value.
Integer	JDBCIdentityCache.getCodeSystemId(String codeSystem)	Get the database id for the named code-system.
Integer	JDBCIdentityCache.getParameterNameId(String parameterName)	Get the database id for the given parameter name.
Integer	JDBCIdentityCache.getResourceTypeId(String resourceType)	Get the database id for the named resourceType.
List<Integer>	JDBCIdentityCache.getResourceTypeIds()	Get the list of all resource type ids.
String	JDBCIdentityCache.getResourceTypeName(Integer resourceTypeId)	Get the resource type name for the resourceTypeId.
List<String>	JDBCIdentityCache.getResourceTypeNames()	Get the list of all resource type names.
Resource	ResourceDAO.insert(Resource resource, List<ExtractedParameterValue> parameters, String parameterHashB64, ParameterDAO parameterDao, Integer ifNoneMatch)	Inserts the passed Resource DTO and its associated search parameters to the appropriate FHIR resource tables.
void	IResourceReferenceDAO.persist(Collection<ResourceTokenValueRec> records, Collection<ResourceProfileRec> profileRecs, Collection<ResourceTokenValueRec> tagRecs, Collection<ResourceTokenValueRec> securityRecs)	Persist the records, which may span multiple resource types
int	ICodeSystemCache.readOrAddCodeSystem(String codeSystem)	Reads the id associated with the name of the passed Parameter from the code_systems table.
int	IParameterNameCache.readOrAddParameterNameId(String parameterName)	Reads the id associated with the name of the passed Parameter from the Parameter_Names table.

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.dao.impl

Methods in com.ibm.fhir.persistence.jdbc.dao.impl with type parameters of type FHIRPersistenceException

Modifier and Type	Method	Description
protected <XT extends FHIRPersistenceException> XT	FHIRDbDAOImpl.severe(Logger logger, XT fx, String errorMessage, Throwable cause)	Log the exception message here along with the cause stack.
protected <XT extends FHIRPersistenceException> XT	FHIRDbDAOImpl.severe(Logger logger, XT fx, Throwable cause)	Convenience function to log the cause of an exception about to be thrown.

Methods in com.ibm.fhir.persistence.jdbc.dao.impl that throw FHIRPersistenceException

Modifier and Type	Method	Description
int	ParameterDAOImpl.acquireCodeSystemId(String codeSystemName)	Acquire and return the id associated with the passed code-system name.
int	ParameterDAOImpl.acquireParameterNameId(String parameterName)	Acquire and return the id associated with the passed parameter name.
void	ResourceReferenceDAO.addNormalizedValues(String resourceType, Collection<ResourceTokenValueRec> xrefs, Collection<ResourceProfileRec> profileRecs, Collection<ResourceTokenValueRec> tagRecs, Collection<ResourceTokenValueRec> securityRecs)
protected void	ResourceDAOImpl.addResourceTypeCacheCandidate(String resourceType, Integer resourceTypeId)	Adds a resource type/ resource id pair to a candidate collection for population into the ResourceTypesCache.
void	ResourceReferenceDAO.close()
int	FetchResourcePayloadsDAO.count(Connection c)	Get a count of the resources matching the filter predicates...for debugging...slows things down a lot
void	ResourceReferenceDAO.flush()
Integer	JDBCIdentityCacheImpl.getCanonicalId(String canonicalValue)
Integer	JDBCIdentityCacheImpl.getCodeSystemId(String codeSystemName)
protected int	ParameterVisitorBatchDAO.getCodeSystemId(String codeSystem)	Looks up the code system.
Integer	JDBCIdentityCacheImpl.getParameterNameId(String parameterName)
protected int	ParameterVisitorBatchDAO.getParameterNameId(String parameterName)	Look up the normalized id for the parameter, adding it to the parameter_names table if it doesn't yet exist
Integer	JDBCIdentityCacheImpl.getResourceTypeId(String resourceType)
List<Integer>	JDBCIdentityCacheImpl.getResourceTypeIds()
String	JDBCIdentityCacheImpl.getResourceTypeName(Integer resourceTypeId)
List<String>	JDBCIdentityCacheImpl.getResourceTypeNames()
Resource	ResourceDAOImpl.insert(Resource resource, List<ExtractedParameterValue> parameters, String parameterHashB64, ParameterDAO parameterDao, Integer ifNoneMatch)
void	ResourceReferenceDAO.persist(Collection<ResourceTokenValueRec> records, Collection<ResourceProfileRec> profileRecs, Collection<ResourceTokenValueRec> tagRecs, Collection<ResourceTokenValueRec> securityRecs)
void	FetchPayloadsForIdsDAO.run(Connection c)	Fetch the payloads using the given connection
List<ResourceChangeLogRecord>	FetchResourceChangesDAO.run(Connection c)	Run the DAO command on the database connection
ResourcePayload	FetchResourcePayloadsDAO.run(Connection c)	Run the query, feeding each result row to the consumer
List<Long>	RetrieveIndexDAO.run(Connection c)	Run the DAO command on the database connection.
void	ParameterVisitorBatchDAO.visit(CompositeParmVal compositeParameter)
void	ParameterVisitorBatchDAO.visit(DateParmVal param)
void	ParameterVisitorBatchDAO.visit(LocationParmVal param)
void	ParameterVisitorBatchDAO.visit(NumberParmVal param)
void	ParameterVisitorBatchDAO.visit(QuantityParmVal param)
void	ParameterVisitorBatchDAO.visit(ReferenceParmVal rpv)
void	ParameterVisitorBatchDAO.visit(StringParmVal param)
void	ParameterVisitorBatchDAO.visit(TokenParmVal param)

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.derby

Methods in com.ibm.fhir.persistence.jdbc.derby that throw FHIRPersistenceException

Modifier and Type	Method	Description
Resource	DerbyResourceDAO.insert(Resource resource, List<ExtractedParameterValue> parameters, String parameterHashB64, ParameterDAO parameterDao, Integer ifNoneMatch)

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.domain

Methods in com.ibm.fhir.persistence.jdbc.domain that throw FHIRPersistenceException

Modifier and Type	Method	Description
QueryData	SearchQueryRenderer.addCanonicalParam(QueryData queryData, String resourceType, QueryParameter queryParm)
T	SearchQueryVisitor.addCanonicalParam(T query, String resourceType, QueryParameter queryParm)	Filter the query using the given canonical parameter
QueryData	SearchQueryRenderer.addChained(QueryData queryData, QueryParameter currentParm)
T	SearchQueryVisitor.addChained(T currentSubQuery, QueryParameter currentParm)	Add a chain subquery element as part of a chained parameter search
QueryData	SearchQueryRenderer.addCompositeParam(QueryData queryData, QueryParameter queryParm)
QueryData	SearchQueryRenderer.addCompositeParam(QueryData queryData, QueryParameter queryParm, boolean isMissing)
T	SearchQueryVisitor.addCompositeParam(T query, QueryParameter queryParm)	Add a composite query parameter filter to the query
T	SearchQueryVisitor.addCompositeParam(T query, QueryParameter queryParm, boolean isMissing)	Add a composite query which only tests missing/not missing, not the actual parameter value
QueryData	SearchQueryRenderer.addDateParam(QueryData queryData, String resourceType, QueryParameter queryParm)
T	SearchQueryVisitor.addDateParam(T queryData, String resourceType, QueryParameter queryParm)	Filter the query using the given date parameter
void	SearchQueryRenderer.addFilter(QueryData queryData, String resourceType, QueryParameter currentParm)
void	SearchQueryVisitor.addFilter(T currentSubQuery, String resourceType, QueryParameter currentParm)	Add a filter predicate to the given chained sub-query element.
protected void	SearchQueryRenderer.addIdFilter(QueryData queryData, String resourceType, QueryParameter queryParm)	Add a filter on the LOGICAL_ID for the given query parameter values
QueryData	SearchQueryRenderer.addIncludeFilter(QueryData queryData, InclusionParameter inclusionParm, List<Long> logicalResourceIds)
T	SearchQueryVisitor.addIncludeFilter(T query, InclusionParameter inclusionParm, List<Long> logicalResourceIds)
QueryData	SearchQueryRenderer.addInclusionParam(QueryData queryData, String resourceType, QueryParameter queryParm)
T	SearchQueryVisitor.addInclusionParam(T query, String resourceType, QueryParameter queryParm)	Special case to handle inclusion related to compartment-based searches
QueryData	SearchQueryRenderer.addLocationParam(QueryData queryData, String resourceType, QueryParameter queryParm)
T	SearchQueryVisitor.addLocationParam(T queryData, String resourceType, QueryParameter queryParm)	Filter the query using the given location (lat/lng) param
QueryData	SearchQueryRenderer.addLocationPosition(QueryData queryData, List<QueryParameter> queryParameters)
T	SearchQueryVisitor.addLocationPosition(T queryData, List<QueryParameter> queryParameters)
QueryData	SearchQueryRenderer.addMissingParam(QueryData queryData, QueryParameter queryParm, boolean isMissing)
T	SearchQueryVisitor.addMissingParam(T query, QueryParameter queryParm, boolean isMissing)	Add a missing (NOT EXISTS) parameter clause to the query
QueryData	SearchQueryRenderer.addNumberParam(QueryData queryData, String resourceType, QueryParameter queryParm)
T	SearchQueryVisitor.addNumberParam(T queryData, String resourceType, QueryParameter queryParm)	Filter the query using the given number parameter
QueryData	SearchQueryRenderer.addQuantityParam(QueryData queryData, String resourceType, QueryParameter queryParm)
T	SearchQueryVisitor.addQuantityParam(T queryData, String resourceType, QueryParameter queryParm)	Filter the query using the given quantity parameter
QueryData	SearchQueryRenderer.addReferenceParam(QueryData queryData, String resourceType, QueryParameter queryParm)
T	SearchQueryVisitor.addReferenceParam(T queryData, String resourceType, QueryParameter queryParm)	Filter the query using the given reference parameter
QueryData	SearchQueryRenderer.addReverseChained(QueryData queryData, QueryParameter currentParm)
T	SearchQueryVisitor.addReverseChained(T currentSubQuery, QueryParameter currentParm)	Add a reverse chain subquery element as part of a chained parameter search
QueryData	SearchQueryRenderer.addRevIncludeFilter(QueryData queryData, InclusionParameter inclusionParm, List<Long> logicalResourceIds)
T	SearchQueryVisitor.addRevIncludeFilter(T query, InclusionParameter inclusionParm, List<Long> logicalResourceIds)
QueryData	SearchQueryRenderer.addSecurityParam(QueryData queryData, String resourceType, QueryParameter queryParm)
T	SearchQueryVisitor.addSecurityParam(T query, String resourceType, QueryParameter queryParm)	Filter the query using the given security query parameter
void	SearchQueryRenderer.addSortParam(QueryData queryData, String code, SearchConstants.Type type, Sort.Direction direction)
void	SearchQueryVisitor.addSortParam(T queryData, String code, SearchConstants.Type type, Sort.Direction direction)	Add the given sort parameter to the sort query
QueryData	SearchQueryRenderer.addStringParam(QueryData queryData, String resourceType, QueryParameter queryParm)
T	SearchQueryVisitor.addStringParam(T query, String resourceType, QueryParameter queryParm)	Filter the query using the given string parameter
QueryData	SearchQueryRenderer.addTagParam(QueryData queryData, String resourceType, QueryParameter queryParm)
T	SearchQueryVisitor.addTagParam(T query, String resourceType, QueryParameter queryParm)	Filter the query using the given tag query parameter
QueryData	SearchQueryRenderer.addTokenParam(QueryData queryData, String resourceType, QueryParameter queryParm)
T	SearchQueryVisitor.addTokenParam(T query, String resourceType, QueryParameter queryParm)	Filter the query using the given parameter id and token value
QueryData	SearchQueryRenderer.addWholeSystemDataFilter(QueryData queryData, String resourceType, List<Long> logicalResourceIds)
T	SearchQueryVisitor.addWholeSystemDataFilter(T query, String resourceType, List<Long> logicalResourceIds)
QueryData	SearchQueryRenderer.addWholeSystemResourceTypeFilter(QueryData queryData, List<Integer> resourceTypeIds)
T	SearchQueryVisitor.addWholeSystemResourceTypeFilter(T query, List<Integer> resourceTypeIds)
protected int	SearchQueryRenderer.getCanonicalId(String canonicalValue)	Get the id for the given canonicalValue (cache lookup).
protected int	SearchQueryRenderer.getCodeSystemId(String codeSystemName)	Get the id for the given code system name (cache lookup)
protected Long	SearchQueryRenderer.getCommonTokenValueId(String system, String code)	Get the common token value id matching the unique tuple {system, code}
protected List<Long>	SearchQueryRenderer.getCommonTokenValueIdList(String code)	Get a list of common token values matching the given code
protected Set<Long>	SearchQueryRenderer.getCommonTokenValueIds(Collection<CommonTokenValue> tokenValues)	Get the common token value ids for the passed list of token values {system, code}.
protected WhereFragment	SearchQueryRenderer.getFilterPredicate(QueryData queryData, QueryParameter queryParm)	Get a simple filter predicate which can be used in the WHERE clause of a search query.
protected WhereFragment	SearchQueryRenderer.getLocationFilter(QueryParameter queryParm, String paramAlias)	Add a filter predicate to the given exists sub-query
protected WhereFragment	SearchQueryRenderer.getNumberFilter(QueryParameter queryParm, String paramAlias)	Get a filter predicate for the given number query parameter
protected int	SearchQueryRenderer.getParameterNameId(String parameterName)	Get the id for the given parameter name (cache lookup)
protected WhereFragment	SearchQueryRenderer.getQuantityFilter(QueryParameter queryParm, String paramAlias)	Add a filter predicate to the given exists sub-query
protected WhereFragment	SearchQueryRenderer.getReferenceFilter(QueryParameter queryParm, String paramAlias)	Create a filter predicate for the given reference query parameter
protected String	SearchQueryRenderer.getSortParameterTableName(String resourceType, String code, SearchConstants.Type type)	Returns the name of the database table corresponding to the code and type of the passed sort parameter.
protected WhereFragment	SearchQueryRenderer.getStringFilter(QueryParameter queryParm, String paramAlias)	Add a filter expression to the given parameter sub-query (which is used as an EXISTS clause)
protected WhereFragment	SearchQueryRenderer.getTokenFilter(QueryParameter queryParm, String paramAlias)	Get the filter predicate for the given token query parameter.
protected WhereFragment	SearchQueryRenderer.paramFilter(QueryParameter queryParm, String paramTableAlias)	Get the filter predicate expression for the given query parameter taking into account its type, modifiers etc.
<T> T	CanonicalSearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	ChainedSearchParam.visit(T query, SearchQueryVisitor<T> visitor)
<T> T	CompositeSearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	DateSearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> void	DomainSortParameter.visit(T queryData, SearchQueryVisitor<T> visitor)	Visitor to apply the sort parameter to the query builder represented by the visitor
<T> T	IdSearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	InclusionSearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	LastUpdatedSearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	LocationSearchExtension.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	LocationSearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	MissingSearchParam.visit(T query, SearchQueryVisitor<T> visitor)
<T> T	NumberSearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	QuantitySearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	ReferenceSearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	SearchDataQuery.visit(SearchQueryVisitor<T> visitor)
<T> T	SearchExtension.visit(T query, SearchQueryVisitor<T> visitor)
<T> T	SearchIncludeQuery.visit(SearchQueryVisitor<T> visitor)
abstract <T> T	SearchParam.visit(T query, SearchQueryVisitor<T> visitor)
<T> T	SearchQuery.visit(SearchQueryVisitor<T> visitor)	Get the root query and attach the parameter filters to it
<T> T	SearchSortQuery.visit(SearchQueryVisitor<T> visitor)
<T> T	SearchWholeSystemDataQuery.visit(SearchQueryVisitor<T> visitor)
<T> T	SearchWholeSystemFilterQuery.visit(SearchQueryVisitor<T> visitor)
<T> T	SearchWholeSystemQuery.visit(SearchQueryVisitor<T> visitor)
<T> T	SecuritySearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	StringSearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	TagSearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> T	TokenSearchParam.visit(T queryData, SearchQueryVisitor<T> visitor)
<T> void	SearchQuery.visitExtensions(T query, SearchQueryVisitor<T> visitor)	Visit each of the extensions configured for this query
protected <T> void	SearchQuery.visitSearchParams(T query, SearchQueryVisitor<T> visitor)	Visit each of the search parameters

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.dto

Methods in com.ibm.fhir.persistence.jdbc.dto that throw FHIRPersistenceException

Modifier and Type	Method	Description
void	CompositeParmVal.accept(ExtractedParameterValueVisitor visitor)	We know our type, so we can call the correct method on the visitor
void	DateParmVal.accept(ExtractedParameterValueVisitor visitor)	We know our type, so we can call the correct method on the visitor
abstract void	ExtractedParameterValue.accept(ExtractedParameterValueVisitor visitor)	We know our type, so we can call the correct method on the visitor
void	LocationParmVal.accept(ExtractedParameterValueVisitor visitor)	We know our type, so we can call the correct method on the visitor
void	NumberParmVal.accept(ExtractedParameterValueVisitor visitor)	We know our type, so we can call the correct method on the visitor
void	QuantityParmVal.accept(ExtractedParameterValueVisitor visitor)	We know our type, so we can call the correct method on the visitor
void	ReferenceParmVal.accept(ExtractedParameterValueVisitor visitor)	We know our type, so we can call the correct method on the visitor
void	StringParmVal.accept(ExtractedParameterValueVisitor visitor)	We know our type, so we can call the correct method on the visitor
void	TokenParmVal.accept(ExtractedParameterValueVisitor visitor)	We know our type, so we can call the correct method on the visitor
void	ExtractedParameterValueVisitor.visit(CompositeParmVal compositeParameter)	Process a composite parameter value
void	ExtractedParameterValueVisitor.visit(DateParmVal dateParameter)	Process a date parameter value
void	ExtractedParameterValueVisitor.visit(LocationParmVal locationParameter)	Process a location parameter value
void	ExtractedParameterValueVisitor.visit(NumberParmVal numberParameter)	Process a number parameter value
void	ExtractedParameterValueVisitor.visit(QuantityParmVal quantityParameter)	Process a quantity parameter value
void	ExtractedParameterValueVisitor.visit(ReferenceParmVal referenceParmVal)	Process a reference parameter value
void	ExtractedParameterValueVisitor.visit(StringParmVal stringParameter)	Process a string parameter value
void	ExtractedParameterValueVisitor.visit(TokenParmVal tokenParameter)	Process a token parameter value

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.exception

Subclasses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.exception

Modifier and Type	Class	Description
class	FHIRPersistenceDataAccessException	This exception class represents failures encountered while attempting to access (read, write) data in the FHIR DB.
class	FHIRPersistenceDBCleanupException	This exception class represents failures encountered while attempting to close/cleanup JDBC resources.
class	FHIRPersistenceDBConnectException	This exception class represents failures encountered while attempting to connect to a JDBC database or datasource.
class	FHIRPersistenceFKVException	This exception class is thrown when Foreign Key violations are encountered while attempting to access data in the FHIR DB.

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.impl

Methods in com.ibm.fhir.persistence.jdbc.impl that throw FHIRPersistenceException

Modifier and Type	Method	Description
protected List<Resource>	FHIRPersistenceJDBCImpl.buildSortedResourceDTOList(ResourceDAO resourceDao, Class<? extends Resource> resourceType, List<Long> sortedIdList)	This method takes the passed list of sorted Resource ids, acquires the ResourceDTO corresponding to each id, and returns those ResourceDTOs in a List, sorted according to the input sorted ids.
List<ResourceChangeLogRecord>	FHIRPersistenceJDBCImpl.changes(int resourceCount, Instant fromLastModified, Long afterResourceId, String resourceTypeName)
<T extends Resource> SingleResourceResult<T>	FHIRPersistenceJDBCImpl.create(FHIRPersistenceContext context, T resource)
<T extends Resource> SingleResourceResult<T>	FHIRPersistenceJDBCImpl.createWithMeta(FHIRPersistenceContext context, T updatedResource)
<T extends Resource> SingleResourceResult<T>	FHIRPersistenceJDBCImpl.delete(FHIRPersistenceContext context, Class<T> resourceType, String logicalId)
void	FHIRPersistenceJDBCImpl.doCachePrefill(Connection connection)	Prefill the caches
ResourceEraseRecord	FHIRPersistenceJDBCImpl.erase(EraseDTO eraseDto)
ResourcePayload	FHIRPersistenceJDBCImpl.fetchResourcePayloads(Class<? extends Resource> resourceType, Instant fromLastModified, Instant toLastModified, Function<ResourcePayload,Boolean> processor)
OperationOutcome	FHIRPersistenceJDBCImpl.getHealth()
<T extends Resource> MultiResourceResult<T>	FHIRPersistenceJDBCImpl.history(FHIRPersistenceContext context, Class<T> resourceType, String logicalId)
void	FHIRPersistenceJDBCImpl.persistResourceTokenValueRecords(Collection<ResourceTokenValueRec> records, Collection<ResourceProfileRec> profileRecs, Collection<ResourceTokenValueRec> tagRecs, Collection<ResourceTokenValueRec> securityRecs)	Called just prior to commit so that we can persist all the token value records that have been accumulated during the transaction.
<T extends Resource> SingleResourceResult<T>	FHIRPersistenceJDBCImpl.read(FHIRPersistenceContext context, Class<T> resourceType, String logicalId)
int	FHIRPersistenceJDBCImpl.reindex(FHIRPersistenceContext context, OperationOutcome.Builder operationOutcomeResult, Instant tstamp, List<Long> indexIds, String resourceLogicalId)
List<Long>	FHIRPersistenceJDBCImpl.retrieveIndex(int count, Instant notModifiedAfter, Long afterIndexId, String resourceTypeName)
MultiResourceResult<Resource>	FHIRPersistenceJDBCImpl.search(FHIRPersistenceContext context, Class<? extends Resource> resourceType)	Search query implementation based on the 1385 new query builder.
Future<PayloadKey>	FHIRPersistenceJDBCImpl.storePayload(Resource resource, String logicalId, int newVersionNumber)
<T extends Resource> SingleResourceResult<T>	FHIRPersistenceJDBCImpl.update(FHIRPersistenceContext context, String logicalId, T resource)
<T extends Resource> SingleResourceResult<T>	FHIRPersistenceJDBCImpl.updateWithMeta(FHIRPersistenceContext context, T resource)
<T extends Resource> SingleResourceResult<T>	FHIRPersistenceJDBCImpl.vread(FHIRPersistenceContext context, Class<T> resourceType, String logicalId, String versionId)

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.postgres

Methods in com.ibm.fhir.persistence.jdbc.postgres that throw FHIRPersistenceException

Modifier and Type	Method	Description
Resource	PostgresResourceDAO.insert(Resource resource, List<ExtractedParameterValue> parameters, String parameterHashB64, ParameterDAO parameterDao, Integer ifNoneMatch)
Resource	PostgresResourceNoProcDAO.insert(Resource resource, List<ExtractedParameterValue> parameters, String parameterHashB64, ParameterDAO parameterDao, Integer ifNoneMatch)

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.util

Methods in com.ibm.fhir.persistence.jdbc.util that throw FHIRPersistenceException

Modifier and Type	Method	Description
static ResourceProfileRec	CanonicalSupport.makeResourceProfileRec(String parameterName, String resourceType, long resourceTypeId, long logicalResourceId, String paramValue, boolean systemLevel)	Process the search parameter value data to generate a ResourceProfileRec DTO.
<T> T	IncludeExtension.visit(T query, SearchQueryVisitor<T> visitor)
void	ParameterHashVisitor.visit(CompositeParmVal compositeParameter)
void	ParameterHashVisitor.visit(DateParmVal param)
void	ParameterHashVisitor.visit(LocationParmVal param)
void	ParameterHashVisitor.visit(NumberParmVal param)
void	ParameterHashVisitor.visit(QuantityParmVal param)
void	ParameterHashVisitor.visit(ReferenceParmVal param)
void	ParameterHashVisitor.visit(StringParmVal param)
void	ParameterHashVisitor.visit(TokenParmVal param)
<T> T	RevIncludeExtension.visit(T query, SearchQueryVisitor<T> visitor)
<T> T	WholeSystemDataExtension.visit(T query, SearchQueryVisitor<T> visitor)
<T> T	WholeSystemResourceTypeExtension.visit(T query, SearchQueryVisitor<T> visitor)

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.jdbc.util.type

Methods in com.ibm.fhir.persistence.jdbc.util.type that throw FHIRPersistenceException

Modifier and Type	Method	Description
void	NewQuantityParmBehaviorUtil.addSystemIfPresent(WhereFragment whereClauseSegment, String tableAlias, String system)	adds the system if present.
void	NewNumberParmBehaviorUtil.executeBehavior(WhereFragment whereClauseSegment, QueryParameter queryParm, String tableAlias)	Add the filter predicate logic to the given whereClauseSegment
void	NewQuantityParmBehaviorUtil.executeBehavior(WhereFragment whereClauseSegment, QueryParameter queryParm, String tableAlias)

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.payload

Methods in com.ibm.fhir.persistence.payload that throw FHIRPersistenceException

Modifier and Type	Method	Description
void	FHIRPayloadPersistence.deletePayload(int resourceTypeId, String logicalId, int version)	Delete the payload item.
<T extends Resource> T	FHIRPayloadPersistence.readResource(Class<T> resourceType, int resourceTypeId, String logicalId, int version, List<String> elements)	Retrieve the payload data for the given resourceTypeId, logicalId and version.
<T extends Resource> Future<T>	FHIRPayloadPersistence.readResource(Class<T> resourceType, PayloadKey payloadKey)	Fetch the resource directly using the payload key.
static InputOutputByteStream	PayloadPersistenceHelper.render(Resource resource, boolean compress)	Render the payload
Future<PayloadKey>	FHIRPayloadPersistence.storePayload(String resourceTypeName, int resourceTypeId, String logicalId, int version, Resource resource)	Store the payload.

Uses of FHIRPersistenceException in com.ibm.fhir.persistence.util

Methods in com.ibm.fhir.persistence.util that throw FHIRPersistenceException

Modifier and Type	Method	Description
protected abstract T1	AbstractQueryBuilder.buildLocationQuerySegment(String parmName, List<Bounding> boundingAreas, String paramTableAlias)	Deprecated. Builds a query segment for the passed parameter name using the geospatial data contained with the passed BoundingBox
T	QueryBuilder.buildQuery(Class<?> resourceType, FHIRSearchContext searchContext)	Deprecated. Build and return query for the passed resource type and search parameters.
static FHIRHistoryContext	FHIRPersistenceUtil.parseHistoryParameters(Map<String,List<String>> queryParameters, boolean lenient)
static FHIRSystemHistoryContext	FHIRPersistenceUtil.parseSystemHistoryParameters(Map<String,List<String>> queryParameters, boolean lenient)
protected abstract T1	AbstractQueryBuilder.processCompositeParm(Class<?> resourceType, QueryParameter queryParm)	Deprecated. Creates a query segment for a Composite type parameter.
protected T1	AbstractQueryBuilder.processLocationPosition(List<QueryParameter> queryParameters, String paramTableAlias)	Deprecated. This method executes special logic for a Token type query that maps to a LocationPosition data type.
protected abstract T1	AbstractQueryBuilder.processNumberParm(Class<?> resourceType, QueryParameter queryParm)	Deprecated. Creates a query segment for a Number type parameter.
protected abstract T1	AbstractQueryBuilder.processStringParm(QueryParameter queryParm)	Deprecated. Creates a query segment for a String type parameter.
protected abstract T1	AbstractQueryBuilder.processTokenParm(Class<?> resourceType, QueryParameter queryParm)	Deprecated. Creates a query segment for a Token type parameter.
protected abstract T1	AbstractQueryBuilder.processUriParm(QueryParameter queryParm)	Deprecated. Creates a query segment for a URI type parameter.

Uses of FHIRPersistenceException in com.ibm.fhir.server.resources

Methods in com.ibm.fhir.server.resources that throw FHIRPersistenceException

Modifier and Type	Method	Description
protected FHIRPersistence	FHIRResource.getPersistenceImpl()	Retrieves the persistence implementation to use for the current request.
protected boolean	FHIRResource.isDeleteSupported()

Uses of FHIRPersistenceException in com.ibm.fhir.server.spi.interceptor

Subclasses of FHIRPersistenceException in com.ibm.fhir.server.spi.interceptor

Modifier and Type	Class	Description
class	FHIRPersistenceInterceptorException

Uses of FHIRPersistenceException in com.ibm.fhir.server.spi.operation

Methods in com.ibm.fhir.server.spi.operation that throw FHIRPersistenceException

Modifier and Type	Method	Description
Map<String,Object>	FHIRResourceHelpers.buildPersistenceEventProperties(String type, String id, String version, FHIRSearchContext searchContext)	Builds a collection of properties that will be passed to the persistence interceptors.

Uses of FHIRPersistenceException in com.ibm.fhir.server.util

Methods in com.ibm.fhir.server.util that throw FHIRPersistenceException

Modifier and Type	Method	Description
Map<String,Object>	FHIRRestHelper.buildPersistenceEventProperties(String type, String id, String version, FHIRSearchContext searchContext)