Package com.ibm.fhir.model.resource

Class SubstanceNucleicAcid.Subunit.Builder

    • Method Detail

      • id

        public SubstanceNucleicAcid.Subunit.Builder id​(java.lang.String id)
        Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
        Overrides:
        id in class BackboneElement.Builder
        Parameters:
        id - Unique id for inter-element referencing
        Returns:
        A reference to this Builder instance

      • extension

        public SubstanceNucleicAcid.Subunit.Builder extension​(Extension... extension)
        May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Overrides:
        extension in class BackboneElement.Builder
        Parameters:
        extension - Additional content defined by implementations
        Returns:
        A reference to this Builder instance

      • extension

        public SubstanceNucleicAcid.Subunit.Builder extension​(java.util.Collection<Extension> extension)
        May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Overrides:
        extension in class BackboneElement.Builder
        Parameters:
        extension - Additional content defined by implementations
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null

      • modifierExtension

        public SubstanceNucleicAcid.Subunit.Builder modifierExtension​(Extension... modifierExtension)
        May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.

        Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Overrides:
        modifierExtension in class BackboneElement.Builder
        Parameters:
        modifierExtension - Extensions that cannot be ignored even if unrecognized
        Returns:
        A reference to this Builder instance

      • modifierExtension

        public SubstanceNucleicAcid.Subunit.Builder modifierExtension​(java.util.Collection<Extension> modifierExtension)
        May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.

        Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Overrides:
        modifierExtension in class BackboneElement.Builder
        Parameters:
        modifierExtension - Extensions that cannot be ignored even if unrecognized
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null

      • subunit

        public SubstanceNucleicAcid.Subunit.Builder subunit​(java.lang.Integer subunit)
        Convenience method for setting subunit.
        Parameters:
        subunit - Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts
        Returns:
        A reference to this Builder instance
        See Also:
        subunit(com.ibm.fhir.model.type.Integer)

      • subunit

        public SubstanceNucleicAcid.Subunit.Builder subunit​(Integer subunit)
        Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.
        Parameters:
        subunit - Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts
        Returns:
        A reference to this Builder instance

      • sequence

        public SubstanceNucleicAcid.Subunit.Builder sequence​(java.lang.String sequence)
        Convenience method for setting sequence.
        Parameters:
        sequence - Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured
        Returns:
        A reference to this Builder instance
        See Also:
        sequence(com.ibm.fhir.model.type.String)

      • sequence

        public SubstanceNucleicAcid.Subunit.Builder sequence​(String sequence)
        Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.
        Parameters:
        sequence - Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured
        Returns:
        A reference to this Builder instance

      • length

        public SubstanceNucleicAcid.Subunit.Builder length​(Integer length)
        The length of the sequence shall be captured.
        Parameters:
        length - The length of the sequence shall be captured
        Returns:
        A reference to this Builder instance

      • fivePrime

        public SubstanceNucleicAcid.Subunit.Builder fivePrime​(CodeableConcept fivePrime)
        The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.
        Parameters:
        fivePrime - The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant
        Returns:
        A reference to this Builder instance

      • threePrime

        public SubstanceNucleicAcid.Subunit.Builder threePrime​(CodeableConcept threePrime)
        The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.
        Parameters:
        threePrime - The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant
        Returns:
        A reference to this Builder instance

      • linkage

        public SubstanceNucleicAcid.Subunit.Builder linkage​(SubstanceNucleicAcid.Subunit.Linkage... linkage)
        The linkages between sugar residues will also be captured.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Parameters:
        linkage - The linkages between sugar residues will also be captured
        Returns:
        A reference to this Builder instance

      • linkage

        public SubstanceNucleicAcid.Subunit.Builder linkage​(java.util.Collection<SubstanceNucleicAcid.Subunit.Linkage> linkage)
        The linkages between sugar residues will also be captured.

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Parameters:
        linkage - The linkages between sugar residues will also be captured
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null

      • sugar

        public SubstanceNucleicAcid.Subunit.Builder sugar​(java.util.Collection<SubstanceNucleicAcid.Subunit.Sugar> sugar)
        5.3.6.8.1 Sugar ID (Mandatory).

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Parameters:
        sugar - 5.3.6.8.1 Sugar ID (Mandatory)
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null