Uses of Class
com.ibm.fhir.model.resource.MolecularSequence.Builder

Packages that use MolecularSequence.Builder

Package	Description
com.ibm.fhir.model.resource

Uses of MolecularSequence.Builder in com.ibm.fhir.model.resource

Methods in com.ibm.fhir.model.resource that return MolecularSequence.Builder

Modifier and Type	Method	Description
static MolecularSequence.Builder	MolecularSequence.builder()
MolecularSequence.Builder	MolecularSequence.Builder.contained(Resource... contained)	These resources do not have an independent existence apart from the resource that contains them - they cannot be identified independently, and nor can they have their own independent transaction scope.
MolecularSequence.Builder	MolecularSequence.Builder.contained(java.util.Collection<Resource> contained)	These resources do not have an independent existence apart from the resource that contains them - they cannot be identified independently, and nor can they have their own independent transaction scope.
MolecularSequence.Builder	MolecularSequence.Builder.coordinateSystem(Integer coordinateSystem)	Whether the sequence is numbered starting at 0 (0-based numbering or coordinates, inclusive start, exclusive end) or starting at 1 (1-based numbering, inclusive start and inclusive end).
MolecularSequence.Builder	MolecularSequence.Builder.coordinateSystem(java.lang.Integer coordinateSystem)	Convenience method for setting coordinateSystem.
MolecularSequence.Builder	MolecularSequence.Builder.device(Reference device)	The method for sequencing, for example, chip information.
MolecularSequence.Builder	MolecularSequence.Builder.extension(Extension... extension)	May be used to represent additional information that is not part of the basic definition of the resource.
MolecularSequence.Builder	MolecularSequence.Builder.extension(java.util.Collection<Extension> extension)	May be used to represent additional information that is not part of the basic definition of the resource.
protected MolecularSequence.Builder	MolecularSequence.Builder.from(MolecularSequence molecularSequence)
MolecularSequence.Builder	MolecularSequence.Builder.id(java.lang.String id)	The logical id of the resource, as used in the URL for the resource.
MolecularSequence.Builder	MolecularSequence.Builder.identifier(Identifier... identifier)	A unique identifier for this particular sequence instance.
MolecularSequence.Builder	MolecularSequence.Builder.identifier(java.util.Collection<Identifier> identifier)	A unique identifier for this particular sequence instance.
MolecularSequence.Builder	MolecularSequence.Builder.implicitRules(Uri implicitRules)	A reference to a set of rules that were followed when the resource was constructed, and which must be understood when processing the content.
MolecularSequence.Builder	MolecularSequence.Builder.language(Code language)	The base language in which the resource is written.
MolecularSequence.Builder	MolecularSequence.Builder.meta(Meta meta)	The metadata about the resource.
MolecularSequence.Builder	MolecularSequence.Builder.modifierExtension(Extension... modifierExtension)	May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants.
MolecularSequence.Builder	MolecularSequence.Builder.modifierExtension(java.util.Collection<Extension> modifierExtension)	May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants.
MolecularSequence.Builder	MolecularSequence.Builder.observedSeq(String observedSeq)	Sequence that was observed.
MolecularSequence.Builder	MolecularSequence.Builder.observedSeq(java.lang.String observedSeq)	Convenience method for setting observedSeq.
MolecularSequence.Builder	MolecularSequence.Builder.patient(Reference patient)	The patient whose sequencing results are described by this resource.
MolecularSequence.Builder	MolecularSequence.Builder.performer(Reference performer)	The organization or lab that should be responsible for this result.
MolecularSequence.Builder	MolecularSequence.Builder.pointer(Reference... pointer)	Pointer to next atomic sequence which at most contains one variant.
MolecularSequence.Builder	MolecularSequence.Builder.pointer(java.util.Collection<Reference> pointer)	Pointer to next atomic sequence which at most contains one variant.
MolecularSequence.Builder	MolecularSequence.Builder.quality(MolecularSequence.Quality... quality)	An experimental feature attribute that defines the quality of the feature in a quantitative way, such as a phred quality score ([SO:0001686](http://www.sequenceontology.org/browser/current_svn/term/SO:0001686)).
MolecularSequence.Builder	MolecularSequence.Builder.quality(java.util.Collection<MolecularSequence.Quality> quality)	An experimental feature attribute that defines the quality of the feature in a quantitative way, such as a phred quality score ([SO:0001686](http://www.sequenceontology.org/browser/current_svn/term/SO:0001686)).
MolecularSequence.Builder	MolecularSequence.Builder.quantity(Quantity quantity)	The number of copies of the sequence of interest.
MolecularSequence.Builder	MolecularSequence.Builder.readCoverage(Integer readCoverage)	Coverage (read depth or depth) is the average number of reads representing a given nucleotide in the reconstructed sequence.
MolecularSequence.Builder	MolecularSequence.Builder.readCoverage(java.lang.Integer readCoverage)	Convenience method for setting readCoverage.
MolecularSequence.Builder	MolecularSequence.Builder.referenceSeq(MolecularSequence.ReferenceSeq referenceSeq)	A sequence that is used as a reference to describe variants that are present in a sequence analyzed.
MolecularSequence.Builder	MolecularSequence.Builder.repository(MolecularSequence.Repository... repository)	Configurations of the external repository.
MolecularSequence.Builder	MolecularSequence.Builder.repository(java.util.Collection<MolecularSequence.Repository> repository)	Configurations of the external repository.
MolecularSequence.Builder	MolecularSequence.Builder.specimen(Reference specimen)	Specimen used for sequencing.
MolecularSequence.Builder	MolecularSequence.Builder.structureVariant(MolecularSequence.StructureVariant... structureVariant)	Information about chromosome structure variation.
MolecularSequence.Builder	MolecularSequence.Builder.structureVariant(java.util.Collection<MolecularSequence.StructureVariant> structureVariant)	Information about chromosome structure variation.
MolecularSequence.Builder	MolecularSequence.Builder.text(Narrative text)	A human-readable narrative that contains a summary of the resource and can be used to represent the content of the resource to a human.
MolecularSequence.Builder	MolecularSequence.toBuilder()
MolecularSequence.Builder	MolecularSequence.Builder.type(SequenceType type)	Amino Acid Sequence/ DNA Sequence / RNA Sequence.
MolecularSequence.Builder	MolecularSequence.Builder.variant(MolecularSequence.Variant... variant)	The definition of variant here originates from Sequence ontology ([variant_of](http://www.sequenceontology.
MolecularSequence.Builder	MolecularSequence.Builder.variant(java.util.Collection<MolecularSequence.Variant> variant)	The definition of variant here originates from Sequence ontology ([variant_of](http://www.sequenceontology.