Package com.ibm.fhir.model.resource

Class MolecularSequence.Quality.Roc

java.lang.Object

com.ibm.fhir.model.visitor.AbstractVisitable

com.ibm.fhir.model.type.Element

com.ibm.fhir.model.type.BackboneElement

com.ibm.fhir.model.resource.MolecularSequence.Quality.Roc

All Implemented Interfaces:

Visitable

Enclosing class:

MolecularSequence.Quality

public static class MolecularSequence.Quality.Roc
extends BackboneElement

Receiver Operator Characteristic (ROC) Curve to give sensitivity/specificity tradeoff.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	MolecularSequence.Quality.Roc.Builder

Field Summary

Fields inherited from class com.ibm.fhir.model.type.BackboneElement

modifierExtension

Fields inherited from class com.ibm.fhir.model.type.Element

extension, hashCode, id

Method Summary

Modifier and Type	Method	Description
void	accept(java.lang.String elementName, int elementIndex, Visitor visitor)	Accept a Visitor and invoke the appropriate visit methods.
static MolecularSequence.Quality.Roc.Builder	builder()
boolean	equals(java.lang.Object obj)
java.util.List<Decimal>	getFMeasure()	Calculated fScore if the GQ score threshold was set to "score" field value.
java.util.List<Integer>	getNumFN()	The number of false negatives if the GQ score threshold was set to "score" field value.
java.util.List<Integer>	getNumFP()	The number of false positives if the GQ score threshold was set to "score" field value.
java.util.List<Integer>	getNumTP()	The number of true positives if the GQ score threshold was set to "score" field value.
java.util.List<Decimal>	getPrecision()	Calculated precision if the GQ score threshold was set to "score" field value.
java.util.List<Integer>	getScore()	Invidual data point representing the GQ (genotype quality) score threshold.
java.util.List<Decimal>	getSensitivity()	Calculated sensitivity if the GQ score threshold was set to "score" field value.
boolean	hasChildren()
int	hashCode()
MolecularSequence.Quality.Roc.Builder	toBuilder()	Create a new Builder from the contents of this Element

Methods inherited from class com.ibm.fhir.model.type.BackboneElement

getModifierExtension

Methods inherited from class com.ibm.fhir.model.type.Element

as, getExtension, getId, hasValue, is

Methods inherited from class com.ibm.fhir.model.visitor.AbstractVisitable

accept, accept, accept, accept, accept, accept, accept, accept, accept, accept, accept, accept, accept, toString

Methods inherited from class java.lang.Object

clone, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.ibm.fhir.model.visitor.Visitable

accept, accept

Method Detail

getScore

public java.util.List<Integer> getScore()

Invidual data point representing the GQ (genotype quality) score threshold.

Returns:

An unmodifiable list containing immutable objects of type Integer that may be empty.

getNumTP

public java.util.List<Integer> getNumTP()

The number of true positives if the GQ score threshold was set to "score" field value.

Returns:

An unmodifiable list containing immutable objects of type Integer that may be empty.

getNumFP

public java.util.List<Integer> getNumFP()

The number of false positives if the GQ score threshold was set to "score" field value.

Returns:

An unmodifiable list containing immutable objects of type Integer that may be empty.

getNumFN

public java.util.List<Integer> getNumFN()

The number of false negatives if the GQ score threshold was set to "score" field value.

Returns:

An unmodifiable list containing immutable objects of type Integer that may be empty.

getPrecision

public java.util.List<Decimal> getPrecision()

Calculated precision if the GQ score threshold was set to "score" field value.

Returns:

An unmodifiable list containing immutable objects of type Decimal that may be empty.

getSensitivity

public java.util.List<Decimal> getSensitivity()

Calculated sensitivity if the GQ score threshold was set to "score" field value.

Returns:

An unmodifiable list containing immutable objects of type Decimal that may be empty.

getFMeasure

public java.util.List<Decimal> getFMeasure()

Calculated fScore if the GQ score threshold was set to "score" field value.

Returns:

An unmodifiable list containing immutable objects of type Decimal that may be empty.

hasChildren

public boolean hasChildren()

Overrides:

hasChildren in class BackboneElement

accept

public void accept(java.lang.String elementName,
                   int elementIndex,
                   Visitor visitor)

Description copied from interface: Visitable

Accept a Visitor and invoke the appropriate visit methods. A typical implementation would look like this:

 if (visitor.preVisit(this)) {
     visitor.visitStart(elementName, elementIndex, this);
     if (visitor.visit(elementName, elementIndex, this)) {
         // visit children
     }
     visitor.visitEnd(elementName, elementIndex, this);
     visitor.postVisit(this);
 }
 

Specified by:

accept in interface Visitable

Specified by:

accept in class AbstractVisitable

Parameters:

elementName - the name of the element in the context of this visit

elementIndex - the index of the element in a list or -1 if it is not contained within a List

visitor - the visitor to use

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

toBuilder

public MolecularSequence.Quality.Roc.Builder toBuilder()

Description copied from class: Element

Create a new Builder from the contents of this Element

Specified by:

toBuilder in class BackboneElement

builder

public static MolecularSequence.Quality.Roc.Builder builder()