Package com.ibm.fhir.model.resource
Class SubstanceProtein.Subunit.Builder
- java.lang.Object
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- com.ibm.fhir.model.builder.AbstractBuilder<Element>
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- com.ibm.fhir.model.type.Element.Builder
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- com.ibm.fhir.model.type.BackboneElement.Builder
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- com.ibm.fhir.model.resource.SubstanceProtein.Subunit.Builder
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- Enclosing class:
- SubstanceProtein.Subunit
public static class SubstanceProtein.Subunit.Builder extends BackboneElement.Builder
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Field Summary
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Fields inherited from class com.ibm.fhir.model.type.BackboneElement.Builder
modifierExtension
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Fields inherited from class com.ibm.fhir.model.type.Element.Builder
extension, id
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description SubstanceProtein.Subunit
build()
Build theSubstanceProtein.Subunit
SubstanceProtein.Subunit.Builder
cTerminalModification(String cTerminalModification)
The modification at the C-terminal shall be specified.SubstanceProtein.Subunit.Builder
cTerminalModificationId(Identifier cTerminalModificationId)
Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.SubstanceProtein.Subunit.Builder
extension(Extension... extension)
May be used to represent additional information that is not part of the basic definition of the element.SubstanceProtein.Subunit.Builder
extension(Collection<Extension> extension)
May be used to represent additional information that is not part of the basic definition of the element.protected SubstanceProtein.Subunit.Builder
from(SubstanceProtein.Subunit subunit)
SubstanceProtein.Subunit.Builder
id(String id)
Unique id for the element within a resource (for internal references).SubstanceProtein.Subunit.Builder
length(Integer length)
Length of linear sequences of amino acids contained in the subunit.SubstanceProtein.Subunit.Builder
modifierExtension(Extension... modifierExtension)
May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants.SubstanceProtein.Subunit.Builder
modifierExtension(Collection<Extension> modifierExtension)
May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants.SubstanceProtein.Subunit.Builder
nTerminalModification(String nTerminalModification)
The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.SubstanceProtein.Subunit.Builder
nTerminalModificationId(Identifier nTerminalModificationId)
Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.SubstanceProtein.Subunit.Builder
sequence(String sequence)
The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single- letter amino acid codes.SubstanceProtein.Subunit.Builder
sequenceAttachment(Attachment sequenceAttachment)
The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single- letter amino acid codes.SubstanceProtein.Subunit.Builder
subunit(Integer subunit)
Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length.-
Methods inherited from class com.ibm.fhir.model.type.BackboneElement.Builder
from
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Methods inherited from class com.ibm.fhir.model.type.Element.Builder
from
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Method Detail
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id
public SubstanceProtein.Subunit.Builder id(String id)
Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.- Overrides:
id
in classBackboneElement.Builder
- Parameters:
id
- Unique id for inter-element referencing- Returns:
- A reference to this Builder instance
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extension
public SubstanceProtein.Subunit.Builder extension(Extension... extension)
May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.Adds new element(s) to the existing list
- Overrides:
extension
in classBackboneElement.Builder
- Parameters:
extension
- Additional content defined by implementations- Returns:
- A reference to this Builder instance
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extension
public SubstanceProtein.Subunit.Builder extension(Collection<Extension> extension)
May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.Replaces the existing list with a new one containing elements from the Collection
- Overrides:
extension
in classBackboneElement.Builder
- Parameters:
extension
- Additional content defined by implementations- Returns:
- A reference to this Builder instance
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modifierExtension
public SubstanceProtein.Subunit.Builder modifierExtension(Extension... modifierExtension)
May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
Adds new element(s) to the existing list
- Overrides:
modifierExtension
in classBackboneElement.Builder
- Parameters:
modifierExtension
- Extensions that cannot be ignored even if unrecognized- Returns:
- A reference to this Builder instance
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modifierExtension
public SubstanceProtein.Subunit.Builder modifierExtension(Collection<Extension> modifierExtension)
May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
Replaces the existing list with a new one containing elements from the Collection
- Overrides:
modifierExtension
in classBackboneElement.Builder
- Parameters:
modifierExtension
- Extensions that cannot be ignored even if unrecognized- Returns:
- A reference to this Builder instance
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subunit
public SubstanceProtein.Subunit.Builder subunit(Integer subunit)
Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.- Parameters:
subunit
- Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts- Returns:
- A reference to this Builder instance
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sequence
public SubstanceProtein.Subunit.Builder sequence(String sequence)
The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single- letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.- Parameters:
sequence
- The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single- letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence- Returns:
- A reference to this Builder instance
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length
public SubstanceProtein.Subunit.Builder length(Integer length)
Length of linear sequences of amino acids contained in the subunit.- Parameters:
length
- Length of linear sequences of amino acids contained in the subunit- Returns:
- A reference to this Builder instance
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sequenceAttachment
public SubstanceProtein.Subunit.Builder sequenceAttachment(Attachment sequenceAttachment)
The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single- letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.- Parameters:
sequenceAttachment
- The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single- letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence- Returns:
- A reference to this Builder instance
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nTerminalModificationId
public SubstanceProtein.Subunit.Builder nTerminalModificationId(Identifier nTerminalModificationId)
Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.- Parameters:
nTerminalModificationId
- Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID- Returns:
- A reference to this Builder instance
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nTerminalModification
public SubstanceProtein.Subunit.Builder nTerminalModification(String nTerminalModification)
The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.- Parameters:
nTerminalModification
- The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified- Returns:
- A reference to this Builder instance
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cTerminalModificationId
public SubstanceProtein.Subunit.Builder cTerminalModificationId(Identifier cTerminalModificationId)
Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.- Parameters:
cTerminalModificationId
- Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID- Returns:
- A reference to this Builder instance
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cTerminalModification
public SubstanceProtein.Subunit.Builder cTerminalModification(String cTerminalModification)
The modification at the C-terminal shall be specified.- Parameters:
cTerminalModification
- The modification at the C-terminal shall be specified- Returns:
- A reference to this Builder instance
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build
public SubstanceProtein.Subunit build()
Build theSubstanceProtein.Subunit
- Specified by:
build
in interfaceBuilder<Element>
- Specified by:
build
in classBackboneElement.Builder
- Returns:
- An immutable object of type
SubstanceProtein.Subunit
- Throws:
IllegalStateException
- if the current state cannot be built into a valid Subunit per the base specification
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from
protected SubstanceProtein.Subunit.Builder from(SubstanceProtein.Subunit subunit)
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