Package com.ibm.fhir.persistence.jdbc.derby

Class DerbyResourceDAO

java.lang.Object

com.ibm.fhir.persistence.jdbc.dao.impl.FHIRDbDAOImpl

com.ibm.fhir.persistence.jdbc.dao.impl.ResourceDAOImpl

com.ibm.fhir.persistence.jdbc.derby.DerbyResourceDAO

All Implemented Interfaces:

FHIRDbDAO, ResourceDAO

public class DerbyResourceDAO
extends ResourceDAOImpl

Data access object for writing FHIR resources to an Apache Derby database.

Field Summary

Fields inherited from class com.ibm.fhir.persistence.jdbc.dao.impl.ResourceDAOImpl

DEFAULT_VALUE_REINDEX_TSTAMP, IDX_DATA, IDX_IS_DELETED, IDX_LAST_UPDATED, IDX_LOGICAL_ID, IDX_LOGICAL_RESOURCE_ID, IDX_RESOURCE_ID, IDX_VERSION_ID

Constructor Summary

Constructors

Constructor	Description
DerbyResourceDAO(Connection connection, String schemaName, FHIRDbFlavor flavor, FHIRPersistenceJDBCCache cache, IResourceReferenceDAO rrd)
DerbyResourceDAO(Connection connection, String schemaName, FHIRDbFlavor flavor, TransactionSynchronizationRegistry trxSynchRegistry, FHIRPersistenceJDBCCache cache, IResourceReferenceDAO rrd, ParameterTransactionDataImpl ptdi)	Derby is not only used for unit tests, but can also be used to provide persistence for a stand-alone full FHIR server.

Method Summary

Modifier and Type	Method	Description
protected void	deleteFromParameterTable(Connection conn, String tableName, long logicalResourceId)	Delete all parameters for the given resourceId from the parameters table
int	getOrCreateResourceType(String resourceTypeName, Connection conn)	stored-procedure-less implementation for managing the resource_types table
protected Integer	getResourceTypeId(String resourceTypeName, Connection conn)	Read the id for the named type
Resource	insert(Resource resource, List<ExtractedParameterValue> parameters, ParameterDAO parameterDao)	Inserts the passed FHIR Resource and associated search parameters to a Derby or PostgreSql FHIR database.
long	storeResource(String tablePrefix, List<ExtractedParameterValue> parameters, String p_logical_id, InputStream p_payload, Timestamp p_last_updated, boolean p_is_deleted, String p_source_key, Integer p_version, Connection conn, ParameterDAO parameterDao)	Store the resource in the database, creating a new logical_resource entry if this is the first version of this resource, or creating a new resource entry if this a new version of an existing logical resource.

Methods inherited from class com.ibm.fhir.persistence.jdbc.dao.impl.ResourceDAOImpl

addResourceTypeCacheCandidate, createDTO, getCache, getResourceReferenceDAO, getResourceTypeIdFromCaches, getSearchByIdsSql, getTransactionData, history, historyCount, read, readAllResourceTypeNames, readResourceTypeId, search, search, search, searchByIds, searchCount, searchCount, searchCount, searchForIds, searchForIds, searchStringValues, setPersistenceContext, versionRead

Methods inherited from class com.ibm.fhir.persistence.jdbc.dao.impl.FHIRDbDAOImpl

buildExceptionWithIssue, buildFHIRPersistenceDBConnectException, cleanup, cleanup, createDTOs, getConnection, getFlavor, getSchemaName, getTranslator, isDb2Database, runCountQuery, runCountQuery, runQuery, runQuery, runQuery_STR_VALUES, severe, severe

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.ibm.fhir.persistence.jdbc.dao.api.FHIRDbDAO

getConnection, getFlavor, isDb2Database

Constructor Detail

DerbyResourceDAO

public DerbyResourceDAO(Connection connection,
                        String schemaName,
                        FHIRDbFlavor flavor,
                        FHIRPersistenceJDBCCache cache,
                        IResourceReferenceDAO rrd)

DerbyResourceDAO

public DerbyResourceDAO(Connection connection,
                        String schemaName,
                        FHIRDbFlavor flavor,
                        TransactionSynchronizationRegistry trxSynchRegistry,
                        FHIRPersistenceJDBCCache cache,
                        IResourceReferenceDAO rrd,
                        ParameterTransactionDataImpl ptdi)

Derby is not only used for unit tests, but can also be used to provide persistence for a stand-alone full FHIR server.

Parameters:

strat - the connection strategy

trxSynchRegistry -

Method Detail

insert

public Resource insert(Resource resource,
                       List<ExtractedParameterValue> parameters,
                       ParameterDAO parameterDao)
                throws FHIRPersistenceException

Inserts the passed FHIR Resource and associated search parameters to a Derby or PostgreSql FHIR database. The search parameters are stored first by calling the passed parameterDao. Then the Resource is stored by sql.

Specified by:

insert in interface ResourceDAO

Overrides:

insert in class ResourceDAOImpl

Parameters:

resource - The FHIR Resource to be inserted.

parameters - The Resource's search parameters to be inserted.

parameterDao -

Returns:

The Resource DTO

Throws:

FHIRPersistenceDataAccessException

FHIRPersistenceDBConnectException

FHIRPersistenceVersionIdMismatchException

FHIRPersistenceException

storeResource

public long storeResource(String tablePrefix,
                          List<ExtractedParameterValue> parameters,
                          String p_logical_id,
                          InputStream p_payload,
                          Timestamp p_last_updated,
                          boolean p_is_deleted,
                          String p_source_key,
                          Integer p_version,
                          Connection conn,
                          ParameterDAO parameterDao)
                   throws Exception

Store the resource in the database, creating a new logical_resource entry if this is the first version of this resource, or creating a new resource entry if this a new version of an existing logical resource. The logic tracks closely the DB2 stored procedure implementation, including locking of the logical_resource and handling concurrency issues using the standard insert-or-update pattern:

   SELECT FOR UPDATE                 -- try and get a write lock
   IF NOT FOUND THEN                 -- doesn't exist, so we don't have a lock
     INSERT new logical resource     -- create the record - if OK, we own the lock
     IF DUPLICATE THEN               -- someone else beat us to the create
       SELECT FOR UPDATE             -- so we need to try again for a write lock
     ...
   ...
 

This works because we never delete a logical_resource record, and so don't have to deal with concurrency issues caused when deletes are mingled with inserts/updates Note the execution flow aligns very closely with the DB2 stored procedure implementation (fhir-persistence-schema/src/main/resources/db2/add_any_resource.sql)

Parameters:

tablePrefix -

parameters -

p_logical_id -

p_payload -

p_last_updated -

p_is_deleted -

p_source_key -

p_version -

Returns:

the resource_id for the entry we created

Throws:

Exception

deleteFromParameterTable

protected void deleteFromParameterTable(Connection conn,
                                        String tableName,
                                        long logicalResourceId)
                                 throws SQLException

Delete all parameters for the given resourceId from the parameters table

Parameters:

conn -

tableName -

logicalResourceId -

Throws:

SQLException

getResourceTypeId

protected Integer getResourceTypeId(String resourceTypeName,
                                    Connection conn)
                             throws SQLException

Read the id for the named type

Parameters:

resourceTypeName -

Returns:

the database id, or null if the named record is not found

Throws:

SQLException

getOrCreateResourceType

public int getOrCreateResourceType(String resourceTypeName,
                                   Connection conn)
                            throws SQLException

stored-procedure-less implementation for managing the resource_types table

Parameters:

resourceTypeName -

Throws:

SQLException