Package com.ibm.fhir.model.resource

Class SubstanceNucleicAcid.Subunit.Linkage

java.lang.Object

com.ibm.fhir.model.visitor.AbstractVisitable

com.ibm.fhir.model.type.Element

com.ibm.fhir.model.type.BackboneElement

com.ibm.fhir.model.resource.SubstanceNucleicAcid.Subunit.Linkage

All Implemented Interfaces:

Visitable

Enclosing class:

SubstanceNucleicAcid.Subunit

public static class SubstanceNucleicAcid.Subunit.Linkage
extends BackboneElement

The linkages between sugar residues will also be captured.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	SubstanceNucleicAcid.Subunit.Linkage.Builder

Field Summary

Fields inherited from class com.ibm.fhir.model.type.BackboneElement

modifierExtension

Fields inherited from class com.ibm.fhir.model.type.Element

extension, hashCode, id

Method Summary

Modifier and Type	Method	Description
void	accept(String elementName, int elementIndex, Visitor visitor)	Accept a Visitor and invoke the appropriate visit methods.
static SubstanceNucleicAcid.Subunit.Linkage.Builder	builder()
boolean	equals(Object obj)
String	getConnectivity()	The entity that links the sugar residues together should also be captured for nearly all naturally occurring nucleic acid the linkage is a phosphate group.
Identifier	getIdentifier()	Each linkage will be registered as a fragment and have an ID.
String	getName()	Each linkage will be registered as a fragment and have at least one name.
String	getResidueSite()	Residues shall be captured as described in 5.3.6.8.3.
boolean	hasChildren()
int	hashCode()
SubstanceNucleicAcid.Subunit.Linkage.Builder	toBuilder()	Create a new Builder from the contents of this Element

Methods inherited from class com.ibm.fhir.model.type.BackboneElement

getModifierExtension

Methods inherited from class com.ibm.fhir.model.type.Element

as, getExtension, getId, hasValue, is

Methods inherited from class com.ibm.fhir.model.visitor.AbstractVisitable

accept, accept, accept, accept, accept, accept, accept, accept, accept, accept, accept, accept, accept, toString

Methods inherited from class java.lang.Object

clone, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.ibm.fhir.model.visitor.Visitable

accept, accept

Method Detail

getConnectivity

public String getConnectivity()

The entity that links the sugar residues together should also be captured for nearly all naturally occurring nucleic acid the linkage is a phosphate group. For many synthetic oligonucleotides phosphorothioate linkages are often seen. Linkage connectivity is assumed to be 3’-5’. If the linkage is either 3’-3’ or 5’-5’ this should be specified.

Returns:

An immutable object of type String that may be null.

getIdentifier

public Identifier getIdentifier()

Each linkage will be registered as a fragment and have an ID.

Returns:

An immutable object of type Identifier that may be null.

getName

public String getName()

Each linkage will be registered as a fragment and have at least one name. A single name shall be assigned to each linkage.

Returns:

An immutable object of type String that may be null.

getResidueSite

public String getResidueSite()

Residues shall be captured as described in 5.3.6.8.3.

Returns:

An immutable object of type String that may be null.

hasChildren

public boolean hasChildren()

Overrides:

hasChildren in class BackboneElement

accept

public void accept(String elementName,
                   int elementIndex,
                   Visitor visitor)

Description copied from interface: Visitable

Accept a Visitor and invoke the appropriate visit methods. A typical implementation would look like this:

 if (visitor.preVisit(this)) {
     visitor.visitStart(elementName, elementIndex, this);
     if (visitor.visit(elementName, elementIndex, this)) {
         // visit children
     }
     visitor.visitEnd(elementName, elementIndex, this);
     visitor.postVisit(this);
 }
 

Specified by:

accept in interface Visitable

Specified by:

accept in class AbstractVisitable

Parameters:

elementName - the name of the element in the context of this visit

elementIndex - the index of the element in a list or -1 if it is not contained within a List

visitor - the visitor to use

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toBuilder

public SubstanceNucleicAcid.Subunit.Linkage.Builder toBuilder()

Description copied from class: Element

Create a new Builder from the contents of this Element

Specified by:

toBuilder in class BackboneElement

builder

public static SubstanceNucleicAcid.Subunit.Linkage.Builder builder()