Uses of Class
org.linuxforhealth.fhir.model.resource.CodeSystem

Packages that use CodeSystem

Package	Description
org.linuxforhealth.fhir.model.resource
org.linuxforhealth.fhir.model.visitor
org.linuxforhealth.fhir.registry.util
org.linuxforhealth.fhir.term.graph.loader.impl
org.linuxforhealth.fhir.term.graph.provider
org.linuxforhealth.fhir.term.graph.registry
org.linuxforhealth.fhir.term.remote.provider
org.linuxforhealth.fhir.term.service
org.linuxforhealth.fhir.term.service.provider
org.linuxforhealth.fhir.term.spi
org.linuxforhealth.fhir.term.util

Uses of CodeSystem in org.linuxforhealth.fhir.model.resource

Methods in org.linuxforhealth.fhir.model.resource that return CodeSystem

Modifier and Type	Method	Description
CodeSystem	CodeSystem.Builder.build()	Build the CodeSystem

Methods in org.linuxforhealth.fhir.model.resource with parameters of type CodeSystem

Modifier and Type	Method	Description
protected CodeSystem.Builder	CodeSystem.Builder.from(CodeSystem codeSystem)
protected void	CodeSystem.Builder.validate(CodeSystem codeSystem)

Uses of CodeSystem in org.linuxforhealth.fhir.model.visitor

Methods in org.linuxforhealth.fhir.model.visitor with parameters of type CodeSystem

Modifier and Type	Method	Description
boolean	DefaultVisitor.visit(java.lang.String elementName, int elementIndex, CodeSystem codeSystem)	Delegates to #visit(elementName, elementIndex, DomainResource)
boolean	Visitor.visit(java.lang.String elementName, int elementIndex, CodeSystem codeSystem)

Uses of CodeSystem in org.linuxforhealth.fhir.registry.util

Methods in org.linuxforhealth.fhir.registry.util with parameters of type CodeSystem

Modifier and Type	Method	Description
boolean	DefinitionalResourceVisitor.visit(java.lang.String elementName, int elementIndex, CodeSystem codeSystem)

Uses of CodeSystem in org.linuxforhealth.fhir.term.graph.loader.impl

Methods in org.linuxforhealth.fhir.term.graph.loader.impl that return CodeSystem

Modifier and Type	Method	Description
CodeSystem	CodeSystemTermGraphLoader.getCodeSystem()

Constructors in org.linuxforhealth.fhir.term.graph.loader.impl with parameters of type CodeSystem

Constructor	Description
CodeSystemTermGraphLoader(org.apache.commons.configuration2.Configuration configuration, CodeSystem codeSystem)
CodeSystemTermGraphLoader(FHIRTermGraph graph, CodeSystem codeSystem)

Uses of CodeSystem in org.linuxforhealth.fhir.term.graph.provider

Methods in org.linuxforhealth.fhir.term.graph.provider with parameters of type CodeSystem

Modifier and Type	Method	Description
java.util.Map<Code,java.util.Set<CodeSystem.Concept>>	GraphTermServiceProvider.closure(CodeSystem codeSystem, java.util.Set<Code> codes)
java.util.Set<CodeSystem.Concept>	GraphTermServiceProvider.closure(CodeSystem codeSystem, Code code)
CodeSystem.Concept	GraphTermServiceProvider.getConcept(CodeSystem codeSystem, Code code)
java.util.Set<CodeSystem.Concept>	GraphTermServiceProvider.getConcepts(CodeSystem codeSystem)
<R> java.util.Set<R>	GraphTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.function.Function<CodeSystem.Concept,? extends R> function)
java.util.Set<CodeSystem.Concept>	GraphTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters)
<R> java.util.Set<R>	GraphTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters, java.util.function.Function<CodeSystem.Concept,? extends R> function)
boolean	GraphTermServiceProvider.hasConcept(CodeSystem codeSystem, Code code)
boolean	GraphTermServiceProvider.hasConcepts(CodeSystem codeSystem, java.util.Set<Code> codes)
boolean	GraphTermServiceProvider.isSupported(CodeSystem codeSystem)
boolean	GraphTermServiceProvider.subsumes(CodeSystem codeSystem, Code codeA, Code codeB)

Uses of CodeSystem in org.linuxforhealth.fhir.term.graph.registry

Fields in org.linuxforhealth.fhir.term.graph.registry declared as CodeSystem

Modifier and Type	Field	Description
static CodeSystem	SnomedRegistryResourceProvider.SNOMED_CODE_SYSTEM

Uses of CodeSystem in org.linuxforhealth.fhir.term.remote.provider

Methods in org.linuxforhealth.fhir.term.remote.provider with parameters of type CodeSystem

Modifier and Type	Method	Description
java.util.Map<Code,java.util.Set<CodeSystem.Concept>>	RemoteTermServiceProvider.closure(CodeSystem codeSystem, java.util.Set<Code> codes)
java.util.Set<CodeSystem.Concept>	RemoteTermServiceProvider.closure(CodeSystem codeSystem, Code code)
CodeSystem.Concept	RemoteTermServiceProvider.getConcept(CodeSystem codeSystem, Code code)
java.util.Set<CodeSystem.Concept>	RemoteTermServiceProvider.getConcepts(CodeSystem codeSystem)
<R> java.util.Set<R>	RemoteTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.function.Function<CodeSystem.Concept,? extends R> function)
java.util.Set<CodeSystem.Concept>	RemoteTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters)
<R> java.util.Set<R>	RemoteTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters, java.util.function.Function<CodeSystem.Concept,? extends R> function)
boolean	RemoteTermServiceProvider.hasConcept(CodeSystem codeSystem, Code code)
boolean	RemoteTermServiceProvider.hasConcepts(CodeSystem codeSystem, java.util.Set<Code> codes)
boolean	RemoteTermServiceProvider.isSupported(CodeSystem codeSystem)
boolean	RemoteTermServiceProvider.subsumes(CodeSystem codeSystem, Code codeA, Code codeB)

Uses of CodeSystem in org.linuxforhealth.fhir.term.service

Methods in org.linuxforhealth.fhir.term.service with parameters of type CodeSystem

Modifier and Type	Method	Description
java.util.Map<Code,java.util.Set<CodeSystem.Concept>>	FHIRTermService.closure(CodeSystem codeSystem, java.util.Set<Code> codes)	Get a map of sets containing CodeSystem.Concept instances where all structural hierarchies have been flattened
java.util.Set<CodeSystem.Concept>	FHIRTermService.closure(CodeSystem codeSystem, Code code)	Get a set containing CodeSystem.Concept instances where all structural hierarchies have been flattened.
CodeSystem.Concept	FHIRTermService.getConcept(CodeSystem codeSystem, Code code)	Get the concept in the provided code system with the specified code.
java.util.Set<CodeSystem.Concept>	FHIRTermService.getConcepts(CodeSystem codeSystem)	Get a set containing CodeSystem.Concept instances where all structural hierarchies have been flattened.
<R> java.util.Set<R>	FHIRTermService.getConcepts(CodeSystem codeSystem, java.util.function.Function<CodeSystem.Concept,? extends R> function)	Get a set containing FHIRTermService instances mapped from concepts where all structural hierarchies have been flattened.
java.util.Set<CodeSystem.Concept>	FHIRTermService.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters)	Get a set containing CodeSystem.Concept instances where all structural hierarchies have been flattened and filtered by the given set of value set include filters.
<R> java.util.Set<R>	FHIRTermService.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters, java.util.function.Function<CodeSystem.Concept,? extends R> function)	Get a set containing FHIRTermService instances mapped from concepts where all structural hierarchies have been flattened and filtered by the given set of value set include filters.
boolean	FHIRTermService.hasConcept(CodeSystem codeSystem, Code code)	Indicates whether the given code system contains a concept with the specified code.
boolean	FHIRTermService.hasConcepts(CodeSystem codeSystem, java.util.Set<Code> codes)	Indicates whether the given code system contains a concept for each of the specified codes.
boolean	FHIRTermService.isSupported(CodeSystem codeSystem)	Indicates whether the given code system is supported.
LookupOutcome	FHIRTermService.lookup(CodeSystem codeSystem, Coding coding, LookupParameters parameters)	Lookup the code system concept for the given coding within the passed CodeSystem
boolean	FHIRTermService.subsumes(CodeSystem codeSystem, Code codeA, Code codeB)	Find the concept in tree rooted by the provided concept that matches the specified code.
ValidationOutcome	FHIRTermService.validateCode(CodeSystem codeSystem, CodeableConcept codeableConcept)	Validate a codeable concept using the provided code system
ValidationOutcome	FHIRTermService.validateCode(CodeSystem codeSystem, CodeableConcept codeableConcept, ValidationParameters parameters)	Validate a codeable concept using the provided code system and validation parameters
ValidationOutcome	FHIRTermService.validateCode(CodeSystem codeSystem, Code code, String display)	Validate a code and display using the provided code system
ValidationOutcome	FHIRTermService.validateCode(CodeSystem codeSystem, Code code, String display, ValidationParameters parameters)	Validate a code and display using the provided code system and validation parameters
ValidationOutcome	FHIRTermService.validateCode(CodeSystem codeSystem, Coding coding)	Validate a coding using the provided code system
ValidationOutcome	FHIRTermService.validateCode(CodeSystem codeSystem, Coding coding, ValidationParameters parameters)	Validate a coding using the provided code system and validation parameters

Uses of CodeSystem in org.linuxforhealth.fhir.term.service.provider

Methods in org.linuxforhealth.fhir.term.service.provider with parameters of type CodeSystem

Modifier and Type	Method	Description
java.util.Set<CodeSystem.Concept>	RegistryTermServiceProvider.closure(CodeSystem codeSystem, Code code)
CodeSystem.Concept	RegistryTermServiceProvider.getConcept(CodeSystem codeSystem, Code code)
java.util.Set<CodeSystem.Concept>	RegistryTermServiceProvider.getConcepts(CodeSystem codeSystem)
<R> java.util.Set<R>	RegistryTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.function.Function<CodeSystem.Concept,? extends R> function)
java.util.Set<CodeSystem.Concept>	RegistryTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters)
<R> java.util.Set<R>	RegistryTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters, java.util.function.Function<CodeSystem.Concept,? extends R> function)
boolean	RegistryTermServiceProvider.hasConcept(CodeSystem codeSystem, Code code)
boolean	RegistryTermServiceProvider.isSupported(CodeSystem codeSystem)
boolean	RegistryTermServiceProvider.subsumes(CodeSystem codeSystem, Code codeA, Code codeB)

Uses of CodeSystem in org.linuxforhealth.fhir.term.spi

Methods in org.linuxforhealth.fhir.term.spi with parameters of type CodeSystem

Modifier and Type	Method	Description
protected void	AbstractTermServiceProvider.checkArgument(CodeSystem codeSystem)
protected <R> void	AbstractTermServiceProvider.checkArguments(CodeSystem codeSystem, java.util.function.Function<CodeSystem.Concept,? extends R> function)
protected void	AbstractTermServiceProvider.checkArguments(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters)
protected <R> void	AbstractTermServiceProvider.checkArguments(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters, java.util.function.Function<CodeSystem.Concept,? extends R> function)
protected void	AbstractTermServiceProvider.checkArguments(CodeSystem codeSystem, Code code)
protected void	AbstractTermServiceProvider.checkArguments(CodeSystem codeSystem, Code codeA, Code codeB)
abstract java.util.Set<CodeSystem.Concept>	AbstractTermServiceProvider.closure(CodeSystem codeSystem, Code code)
default java.util.Map<Code,java.util.Set<CodeSystem.Concept>>	FHIRTermServiceProvider.closure(CodeSystem codeSystem, java.util.Set<Code> codes)	Get a map of sets containing CodeSystem.Concept instances where all structural hierarchies have been flattened
java.util.Set<CodeSystem.Concept>	FHIRTermServiceProvider.closure(CodeSystem codeSystem, Code code)	Get a set containing CodeSystem.Concept instances where all structural hierarchies have been flattened.
abstract CodeSystem.Concept	AbstractTermServiceProvider.getConcept(CodeSystem codeSystem, Code code)
CodeSystem.Concept	FHIRTermServiceProvider.getConcept(CodeSystem codeSystem, Code code)	Get the concept in the provided code system with the specified code.
abstract java.util.Set<CodeSystem.Concept>	AbstractTermServiceProvider.getConcepts(CodeSystem codeSystem)
abstract java.util.Set<CodeSystem.Concept>	AbstractTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters)
java.util.Set<CodeSystem.Concept>	FHIRTermServiceProvider.getConcepts(CodeSystem codeSystem)	Get a set containing CodeSystem.Concept instances where all structural hierarchies have been flattened.
default <R> java.util.Set<R>	FHIRTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.function.Function<CodeSystem.Concept,? extends R> function)	Get a set containing FHIRTermServiceProvider instances mapped from concepts where all structural hierarchies have been flattened.
java.util.Set<CodeSystem.Concept>	FHIRTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters)	Get a set containing CodeSystem.Concept instances where all structural hierarchies have been flattened and filtered by the given set of value set include filters.
default <R> java.util.Set<R>	FHIRTermServiceProvider.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters, java.util.function.Function<CodeSystem.Concept,? extends R> function)	Get a set containing FHIRTermServiceProvider instances mapped from concepts where all structural hierarchies have been flattened and filtered by the given set of value set include filters.
abstract boolean	AbstractTermServiceProvider.hasConcept(CodeSystem codeSystem, Code code)
boolean	FHIRTermServiceProvider.hasConcept(CodeSystem codeSystem, Code code)	Indicates whether the given code system contains a concept with the specified code.
default boolean	FHIRTermServiceProvider.hasConcepts(CodeSystem codeSystem, java.util.Set<Code> codes)	Indicates whether the given code system contains a concept for each of the specified codes.
abstract boolean	AbstractTermServiceProvider.isSupported(CodeSystem codeSystem)
boolean	FHIRTermServiceProvider.isSupported(CodeSystem codeSystem)	Indicates whether the given code system is supported.
abstract boolean	AbstractTermServiceProvider.subsumes(CodeSystem codeSystem, Code codeA, Code codeB)
boolean	FHIRTermServiceProvider.subsumes(CodeSystem codeSystem, Code codeA, Code codeB)	Indicates whether the concept for CodeA subsumes the concept for codeB in the passed CodeSystem.

Uses of CodeSystem in org.linuxforhealth.fhir.term.util

Methods in org.linuxforhealth.fhir.term.util that return CodeSystem

Modifier and Type	Method	Description
static CodeSystem	CodeSystemSupport.convertToSimpleCodeSystem(CodeSystem codeSystem)	Convert the passed codeSystem into a "simple" CodeSystem...one where all concept hierarchy is expressed through nested concepts rather than properties.
static CodeSystem	CodeSystemSupport.getCodeSystem(java.lang.String url)	Get the code system associated with the given url from the FHIR registry.

Methods in org.linuxforhealth.fhir.term.util with parameters of type CodeSystem

Modifier and Type	Method	Description
static CodeSystem	CodeSystemSupport.convertToSimpleCodeSystem(CodeSystem codeSystem)	Convert the passed codeSystem into a "simple" CodeSystem...one where all concept hierarchy is expressed through nested concepts rather than properties.
static CodeSystem.Concept	CodeSystemSupport.findConcept(CodeSystem codeSystem, CodeSystem.Concept concept, Code code)	Find the concept in tree rooted by the provided concept that matches the specified code.
static CodeSystem.Concept	CodeSystemSupport.findConcept(CodeSystem codeSystem, Code code)	Find the concept in the provided code system that matches the specified code.
static java.util.Set<java.lang.String>	CodeSystemSupport.getAncestorsAndSelf(CodeSystem codeSystem, Code code)	Get all of the concepts, from the provided code system, that subsume the concept with the specified code.
static CodeSystem.Filter	CodeSystemSupport.getCodeSystemFilter(CodeSystem codeSystem, Code code, FilterOperator operator)	Get the code system filter with the given property code and filter operator.
static CodeSystem.Property	CodeSystemSupport.getCodeSystemProperty(CodeSystem codeSystem, Code code)	Get the code system property that matches the specified code.
static PropertyType	CodeSystemSupport.getCodeSystemPropertyType(CodeSystem codeSystem, Code code)	Get the type of the code system property that matches the specified code.
static java.util.function.Function<CodeSystem.Concept,java.lang.String>	CodeSystemSupport.getCodeValueFunction(CodeSystem codeSystem)	Get the appropriate code value function for the given code system based on its case sensitivity.
static java.util.Set<CodeSystem.Concept>	CodeSystemSupport.getConcepts(CodeSystem codeSystem)	Get a set containing CodeSystem.Concept instances where all structural hierarchies have been flattened.
static <R> java.util.Set<R>	CodeSystemSupport.getConcepts(CodeSystem codeSystem, java.util.function.Function<CodeSystem.Concept,? extends R> function)	Get a set containing CodeSystemSupport instances mapped from concepts where all structural hierarchies have been flattened.
static java.util.Set<CodeSystem.Concept>	CodeSystemSupport.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters)	Get a set containing CodeSystem.Concept instances where all structural hierarchies have been flattened and filtered by the given set of value set include filters.
static <R> java.util.Set<R>	CodeSystemSupport.getConcepts(CodeSystem codeSystem, java.util.List<ValueSet.Compose.Include.Filter> filters, java.util.function.Function<CodeSystem.Concept,? extends R> function)	Get a set containing CodeSystemSupport instances mapped from concepts where all structural hierarchies have been flattened and filtered by the given set of value set include filters.
static java.util.Set<java.lang.String>	CodeSystemSupport.getDescendantsAndSelf(CodeSystem codeSystem, Code code)	Get all of the concepts, from the provided code system, that are subsumed by the concept with the specified code.
static boolean	CodeSystemSupport.hasCodeSystemFilter(CodeSystem codeSystem, Code code, FilterOperator operator)	Determine whether a code system filter with the specified property code and filter operator exists in the provided code system.
static boolean	CodeSystemSupport.hasCodeSystemProperty(CodeSystem codeSystem, Code code)	Determine whether a code system property with the specified code exists in the provided code system.
static boolean	CodeSystemSupport.hasPropertyHierarchy(CodeSystem codeSystem)
static boolean	CodeSystemSupport.isCaseSensitive(CodeSystem codeSystem)	Indicates whether the code system is case sensitive