static MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.builder() |
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.chromosome(CodeableConcept chromosome) |
Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of
specific proteins at one or more origins of replication ([SO:0000340](http://www.sequenceontology.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.extension(java.util.Collection<Extension> extension) |
May be used to represent additional information that is not part of the basic definition of the element.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.extension(Extension... extension) |
May be used to represent additional information that is not part of the basic definition of the element.
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protected MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.from(MolecularSequence.ReferenceSeq referenceSeq) |
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.genomeBuild(java.lang.String genomeBuild) |
Convenience method for setting genomeBuild.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.genomeBuild(String genomeBuild) |
The Genome Build used for reference, following GRCh build versions e.g.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.id(java.lang.String id) |
Unique id for the element within a resource (for internal references).
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.modifierExtension(java.util.Collection<Extension> modifierExtension) |
May be used to represent additional information that is not part of the basic definition of the element and that
modifies the understanding of the element in which it is contained and/or the understanding of the containing
element's descendants.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.modifierExtension(Extension... modifierExtension) |
May be used to represent additional information that is not part of the basic definition of the element and that
modifies the understanding of the element in which it is contained and/or the understanding of the containing
element's descendants.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.orientation(OrientationType orientation) |
A relative reference to a DNA strand based on gene orientation.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.referenceSeqId(CodeableConcept referenceSeqId) |
Reference identifier of reference sequence submitted to NCBI.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.referenceSeqPointer(Reference referenceSeqPointer) |
A pointer to another MolecularSequence entity as reference sequence.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.referenceSeqString(java.lang.String referenceSeqString) |
Convenience method for setting referenceSeqString.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.referenceSeqString(String referenceSeqString) |
A string like "ACGT".
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.strand(StrandType strand) |
An absolute reference to a strand.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.toBuilder() |
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.windowEnd(java.lang.Integer windowEnd) |
Convenience method for setting windowEnd.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.windowEnd(Integer windowEnd) |
End position of the window on the reference sequence.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.windowStart(java.lang.Integer windowStart) |
Convenience method for setting windowStart.
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MolecularSequence.ReferenceSeq.Builder |
MolecularSequence.ReferenceSeq.Builder.windowStart(Integer windowStart) |
Start position of the window on the reference sequence.
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