Class MolecularSequence.StructureVariant.Builder
- java.lang.Object
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- org.linuxforhealth.fhir.model.builder.AbstractBuilder<Element>
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- org.linuxforhealth.fhir.model.type.Element.Builder
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- org.linuxforhealth.fhir.model.type.BackboneElement.Builder
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- org.linuxforhealth.fhir.model.resource.MolecularSequence.StructureVariant.Builder
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- Enclosing class:
- MolecularSequence.StructureVariant
public static class MolecularSequence.StructureVariant.Builder extends BackboneElement.Builder
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Field Summary
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Fields inherited from class org.linuxforhealth.fhir.model.type.BackboneElement.Builder
modifierExtension
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Fields inherited from class org.linuxforhealth.fhir.model.type.Element.Builder
extension, id
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Fields inherited from class org.linuxforhealth.fhir.model.builder.AbstractBuilder
validating
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description MolecularSequence.StructureVariant
build()
Build theMolecularSequence.StructureVariant
MolecularSequence.StructureVariant.Builder
exact(java.lang.Boolean exact)
Convenience method for settingexact
.MolecularSequence.StructureVariant.Builder
exact(Boolean exact)
Used to indicate if the outer and inner start-end values have the same meaning.MolecularSequence.StructureVariant.Builder
extension(java.util.Collection<Extension> extension)
May be used to represent additional information that is not part of the basic definition of the element.MolecularSequence.StructureVariant.Builder
extension(Extension... extension)
May be used to represent additional information that is not part of the basic definition of the element.protected MolecularSequence.StructureVariant.Builder
from(MolecularSequence.StructureVariant structureVariant)
MolecularSequence.StructureVariant.Builder
id(java.lang.String id)
Unique id for the element within a resource (for internal references).MolecularSequence.StructureVariant.Builder
inner(MolecularSequence.StructureVariant.Inner inner)
Structural variant inner.MolecularSequence.StructureVariant.Builder
length(java.lang.Integer length)
Convenience method for settinglength
.MolecularSequence.StructureVariant.Builder
length(Integer length)
Length of the variant chromosome.MolecularSequence.StructureVariant.Builder
modifierExtension(java.util.Collection<Extension> modifierExtension)
May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants.MolecularSequence.StructureVariant.Builder
modifierExtension(Extension... modifierExtension)
May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants.MolecularSequence.StructureVariant.Builder
outer(MolecularSequence.StructureVariant.Outer outer)
Structural variant outer.protected void
validate(MolecularSequence.StructureVariant structureVariant)
MolecularSequence.StructureVariant.Builder
variantType(CodeableConcept variantType)
Information about chromosome structure variation DNA change type.-
Methods inherited from class org.linuxforhealth.fhir.model.type.BackboneElement.Builder
from, validate
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Methods inherited from class org.linuxforhealth.fhir.model.type.Element.Builder
from, validate
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Methods inherited from class org.linuxforhealth.fhir.model.builder.AbstractBuilder
isValidating, setValidating
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Method Detail
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id
public MolecularSequence.StructureVariant.Builder id(java.lang.String id)
Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.- Overrides:
id
in classBackboneElement.Builder
- Parameters:
id
- Unique id for inter-element referencing- Returns:
- A reference to this Builder instance
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extension
public MolecularSequence.StructureVariant.Builder extension(Extension... extension)
May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.Adds new element(s) to the existing list. If any of the elements are null, calling
build()
will fail.- Overrides:
extension
in classBackboneElement.Builder
- Parameters:
extension
- Additional content defined by implementations- Returns:
- A reference to this Builder instance
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extension
public MolecularSequence.StructureVariant.Builder extension(java.util.Collection<Extension> extension)
May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling
build()
will fail.- Overrides:
extension
in classBackboneElement.Builder
- Parameters:
extension
- Additional content defined by implementations- Returns:
- A reference to this Builder instance
- Throws:
java.lang.NullPointerException
- If the passed collection is null
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modifierExtension
public MolecularSequence.StructureVariant.Builder modifierExtension(Extension... modifierExtension)
May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
Adds new element(s) to the existing list. If any of the elements are null, calling
build()
will fail.- Overrides:
modifierExtension
in classBackboneElement.Builder
- Parameters:
modifierExtension
- Extensions that cannot be ignored even if unrecognized- Returns:
- A reference to this Builder instance
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modifierExtension
public MolecularSequence.StructureVariant.Builder modifierExtension(java.util.Collection<Extension> modifierExtension)
May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling
build()
will fail.- Overrides:
modifierExtension
in classBackboneElement.Builder
- Parameters:
modifierExtension
- Extensions that cannot be ignored even if unrecognized- Returns:
- A reference to this Builder instance
- Throws:
java.lang.NullPointerException
- If the passed collection is null
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variantType
public MolecularSequence.StructureVariant.Builder variantType(CodeableConcept variantType)
Information about chromosome structure variation DNA change type.- Parameters:
variantType
- Structural variant change type- Returns:
- A reference to this Builder instance
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exact
public MolecularSequence.StructureVariant.Builder exact(java.lang.Boolean exact)
Convenience method for settingexact
.- Parameters:
exact
- Does the structural variant have base pair resolution breakpoints?- Returns:
- A reference to this Builder instance
- See Also:
exact(org.linuxforhealth.fhir.model.type.Boolean)
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exact
public MolecularSequence.StructureVariant.Builder exact(Boolean exact)
Used to indicate if the outer and inner start-end values have the same meaning.- Parameters:
exact
- Does the structural variant have base pair resolution breakpoints?- Returns:
- A reference to this Builder instance
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length
public MolecularSequence.StructureVariant.Builder length(java.lang.Integer length)
Convenience method for settinglength
.- Parameters:
length
- Structural variant length- Returns:
- A reference to this Builder instance
- See Also:
length(org.linuxforhealth.fhir.model.type.Integer)
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length
public MolecularSequence.StructureVariant.Builder length(Integer length)
Length of the variant chromosome.- Parameters:
length
- Structural variant length- Returns:
- A reference to this Builder instance
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outer
public MolecularSequence.StructureVariant.Builder outer(MolecularSequence.StructureVariant.Outer outer)
Structural variant outer.- Parameters:
outer
- Structural variant outer- Returns:
- A reference to this Builder instance
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inner
public MolecularSequence.StructureVariant.Builder inner(MolecularSequence.StructureVariant.Inner inner)
Structural variant inner.- Parameters:
inner
- Structural variant inner- Returns:
- A reference to this Builder instance
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build
public MolecularSequence.StructureVariant build()
Build theMolecularSequence.StructureVariant
- Specified by:
build
in interfaceBuilder<Element>
- Specified by:
build
in classBackboneElement.Builder
- Returns:
- An immutable object of type
MolecularSequence.StructureVariant
- Throws:
java.lang.IllegalStateException
- if the current state cannot be built into a valid StructureVariant per the base specification
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validate
protected void validate(MolecularSequence.StructureVariant structureVariant)
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from
protected MolecularSequence.StructureVariant.Builder from(MolecularSequence.StructureVariant structureVariant)
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