Package com.ibm.fhir.model.resource
Class SubstanceProtein.Subunit
- java.lang.Object
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- com.ibm.fhir.model.visitor.AbstractVisitable
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- com.ibm.fhir.model.type.Element
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- com.ibm.fhir.model.type.BackboneElement
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- com.ibm.fhir.model.resource.SubstanceProtein.Subunit
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- All Implemented Interfaces:
Visitable
- Enclosing class:
- SubstanceProtein
public static class SubstanceProtein.Subunit extends BackboneElement
This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times.
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Nested Class Summary
Nested Classes Modifier and Type Class Description static class
SubstanceProtein.Subunit.Builder
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Field Summary
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Fields inherited from class com.ibm.fhir.model.type.BackboneElement
modifierExtension
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description void
accept(java.lang.String elementName, int elementIndex, Visitor visitor)
Accept a Visitor and invoke the appropriate visit methods.static SubstanceProtein.Subunit.Builder
builder()
boolean
equals(java.lang.Object obj)
String
getCTerminalModification()
The modification at the C-terminal shall be specified.Identifier
getCTerminalModificationId()
Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.Integer
getLength()
Length of linear sequences of amino acids contained in the subunit.String
getNTerminalModification()
The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.Identifier
getNTerminalModificationId()
Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.String
getSequence()
The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single- letter amino acid codes.Attachment
getSequenceAttachment()
The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single- letter amino acid codes.Integer
getSubunit()
Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length.boolean
hasChildren()
int
hashCode()
SubstanceProtein.Subunit.Builder
toBuilder()
Create a new Builder from the contents of this Element-
Methods inherited from class com.ibm.fhir.model.type.BackboneElement
getModifierExtension
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Method Detail
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getSubunit
public Integer getSubunit()
Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.- Returns:
- An immutable object of type
Integer
that may be null.
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getSequence
public String getSequence()
The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single- letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.- Returns:
- An immutable object of type
String
that may be null.
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getLength
public Integer getLength()
Length of linear sequences of amino acids contained in the subunit.- Returns:
- An immutable object of type
Integer
that may be null.
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getSequenceAttachment
public Attachment getSequenceAttachment()
The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single- letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.- Returns:
- An immutable object of type
Attachment
that may be null.
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getNTerminalModificationId
public Identifier getNTerminalModificationId()
Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.- Returns:
- An immutable object of type
Identifier
that may be null.
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getNTerminalModification
public String getNTerminalModification()
The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.- Returns:
- An immutable object of type
String
that may be null.
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getCTerminalModificationId
public Identifier getCTerminalModificationId()
Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.- Returns:
- An immutable object of type
Identifier
that may be null.
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getCTerminalModification
public String getCTerminalModification()
The modification at the C-terminal shall be specified.- Returns:
- An immutable object of type
String
that may be null.
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hasChildren
public boolean hasChildren()
- Overrides:
hasChildren
in classBackboneElement
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accept
public void accept(java.lang.String elementName, int elementIndex, Visitor visitor)
Description copied from interface:Visitable
Accept a Visitor and invoke the appropriate visit methods. A typical implementation would look like this:if (visitor.preVisit(this)) { visitor.visitStart(elementName, elementIndex, this); if (visitor.visit(elementName, elementIndex, this)) { // visit children } visitor.visitEnd(elementName, elementIndex, this); visitor.postVisit(this); }
- Specified by:
accept
in interfaceVisitable
- Specified by:
accept
in classAbstractVisitable
- Parameters:
elementName
- the name of the element in the context of this visitelementIndex
- the index of the element in a list or -1 if it is not contained within a Listvisitor
- the visitor to use
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equals
public boolean equals(java.lang.Object obj)
- Overrides:
equals
in classjava.lang.Object
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hashCode
public int hashCode()
- Overrides:
hashCode
in classjava.lang.Object
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toBuilder
public SubstanceProtein.Subunit.Builder toBuilder()
Description copied from class:Element
Create a new Builder from the contents of this Element- Specified by:
toBuilder
in classBackboneElement
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builder
public static SubstanceProtein.Subunit.Builder builder()
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