Package org.linuxforhealth.fhir.model.resource

Class MolecularSequence.Quality.Roc.Builder

    • Method Detail

      • id

        public MolecularSequence.Quality.Roc.Builder id​(java.lang.String id)
        Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
        Overrides:
        id in class BackboneElement.Builder
        Parameters:
        id - Unique id for inter-element referencing
        Returns:
        A reference to this Builder instance

      • extension

        public MolecularSequence.Quality.Roc.Builder extension​(Extension... extension)
        May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Overrides:
        extension in class BackboneElement.Builder
        Parameters:
        extension - Additional content defined by implementations
        Returns:
        A reference to this Builder instance

      • extension

        public MolecularSequence.Quality.Roc.Builder extension​(java.util.Collection<Extension> extension)
        May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Overrides:
        extension in class BackboneElement.Builder
        Parameters:
        extension - Additional content defined by implementations
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null

      • modifierExtension

        public MolecularSequence.Quality.Roc.Builder modifierExtension​(Extension... modifierExtension)
        May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.

        Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Overrides:
        modifierExtension in class BackboneElement.Builder
        Parameters:
        modifierExtension - Extensions that cannot be ignored even if unrecognized
        Returns:
        A reference to this Builder instance

      • modifierExtension

        public MolecularSequence.Quality.Roc.Builder modifierExtension​(java.util.Collection<Extension> modifierExtension)
        May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.

        Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Overrides:
        modifierExtension in class BackboneElement.Builder
        Parameters:
        modifierExtension - Extensions that cannot be ignored even if unrecognized
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null

      • score

        public MolecularSequence.Quality.Roc.Builder score​(java.lang.Integer... score)
        Convenience method for setting score.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Parameters:
        score - Genotype quality score
        Returns:
        A reference to this Builder instance
        See Also:
        #score(org.linuxforhealth.fhir.model.type.Integer)

      • score

        public MolecularSequence.Quality.Roc.Builder score​(Integer... score)
        Invidual data point representing the GQ (genotype quality) score threshold.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Parameters:
        score - Genotype quality score
        Returns:
        A reference to this Builder instance

      • score

        public MolecularSequence.Quality.Roc.Builder score​(java.util.Collection<Integer> score)
        Invidual data point representing the GQ (genotype quality) score threshold.

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Parameters:
        score - Genotype quality score
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null

      • numTP

        public MolecularSequence.Quality.Roc.Builder numTP​(java.lang.Integer... numTP)
        Convenience method for setting numTP.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Parameters:
        numTP - Roc score true positive numbers
        Returns:
        A reference to this Builder instance
        See Also:
        #numTP(org.linuxforhealth.fhir.model.type.Integer)

      • numTP

        public MolecularSequence.Quality.Roc.Builder numTP​(Integer... numTP)
        The number of true positives if the GQ score threshold was set to "score" field value.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Parameters:
        numTP - Roc score true positive numbers
        Returns:
        A reference to this Builder instance

      • numTP

        public MolecularSequence.Quality.Roc.Builder numTP​(java.util.Collection<Integer> numTP)
        The number of true positives if the GQ score threshold was set to "score" field value.

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Parameters:
        numTP - Roc score true positive numbers
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null

      • numFP

        public MolecularSequence.Quality.Roc.Builder numFP​(java.lang.Integer... numFP)
        Convenience method for setting numFP.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Parameters:
        numFP - Roc score false positive numbers
        Returns:
        A reference to this Builder instance
        See Also:
        #numFP(org.linuxforhealth.fhir.model.type.Integer)

      • numFP

        public MolecularSequence.Quality.Roc.Builder numFP​(Integer... numFP)
        The number of false positives if the GQ score threshold was set to "score" field value.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Parameters:
        numFP - Roc score false positive numbers
        Returns:
        A reference to this Builder instance

      • numFP

        public MolecularSequence.Quality.Roc.Builder numFP​(java.util.Collection<Integer> numFP)
        The number of false positives if the GQ score threshold was set to "score" field value.

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Parameters:
        numFP - Roc score false positive numbers
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null

      • numFN

        public MolecularSequence.Quality.Roc.Builder numFN​(java.lang.Integer... numFN)
        Convenience method for setting numFN.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Parameters:
        numFN - Roc score false negative numbers
        Returns:
        A reference to this Builder instance
        See Also:
        #numFN(org.linuxforhealth.fhir.model.type.Integer)

      • numFN

        public MolecularSequence.Quality.Roc.Builder numFN​(Integer... numFN)
        The number of false negatives if the GQ score threshold was set to "score" field value.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Parameters:
        numFN - Roc score false negative numbers
        Returns:
        A reference to this Builder instance

      • numFN

        public MolecularSequence.Quality.Roc.Builder numFN​(java.util.Collection<Integer> numFN)
        The number of false negatives if the GQ score threshold was set to "score" field value.

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Parameters:
        numFN - Roc score false negative numbers
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null

      • precision

        public MolecularSequence.Quality.Roc.Builder precision​(Decimal... precision)
        Calculated precision if the GQ score threshold was set to "score" field value.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Parameters:
        precision - Precision of the GQ score
        Returns:
        A reference to this Builder instance

      • precision

        public MolecularSequence.Quality.Roc.Builder precision​(java.util.Collection<Decimal> precision)
        Calculated precision if the GQ score threshold was set to "score" field value.

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Parameters:
        precision - Precision of the GQ score
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null

      • sensitivity

        public MolecularSequence.Quality.Roc.Builder sensitivity​(Decimal... sensitivity)
        Calculated sensitivity if the GQ score threshold was set to "score" field value.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Parameters:
        sensitivity - Sensitivity of the GQ score
        Returns:
        A reference to this Builder instance

      • sensitivity

        public MolecularSequence.Quality.Roc.Builder sensitivity​(java.util.Collection<Decimal> sensitivity)
        Calculated sensitivity if the GQ score threshold was set to "score" field value.

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Parameters:
        sensitivity - Sensitivity of the GQ score
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null

      • fMeasure

        public MolecularSequence.Quality.Roc.Builder fMeasure​(Decimal... fMeasure)
        Calculated fScore if the GQ score threshold was set to "score" field value.

        Adds new element(s) to the existing list. If any of the elements are null, calling build() will fail.

        Parameters:
        fMeasure - FScore of the GQ score
        Returns:
        A reference to this Builder instance

      • fMeasure

        public MolecularSequence.Quality.Roc.Builder fMeasure​(java.util.Collection<Decimal> fMeasure)
        Calculated fScore if the GQ score threshold was set to "score" field value.

        Replaces the existing list with a new one containing elements from the Collection. If any of the elements are null, calling build() will fail.

        Parameters:
        fMeasure - FScore of the GQ score
        Returns:
        A reference to this Builder instance
        Throws:
        java.lang.NullPointerException - If the passed collection is null