Class MolecularSequence.Quality.Roc
- java.lang.Object
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- org.linuxforhealth.fhir.model.visitor.AbstractVisitable
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- org.linuxforhealth.fhir.model.type.Element
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- org.linuxforhealth.fhir.model.type.BackboneElement
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- org.linuxforhealth.fhir.model.resource.MolecularSequence.Quality.Roc
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- All Implemented Interfaces:
Visitable
- Enclosing class:
- MolecularSequence.Quality
public static class MolecularSequence.Quality.Roc extends BackboneElement
Receiver Operator Characteristic (ROC) Curve to give sensitivity/specificity tradeoff.
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Nested Class Summary
Nested Classes Modifier and Type Class Description static class
MolecularSequence.Quality.Roc.Builder
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Field Summary
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Fields inherited from class org.linuxforhealth.fhir.model.type.BackboneElement
modifierExtension
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description void
accept(java.lang.String elementName, int elementIndex, Visitor visitor)
Accept a Visitor and invoke the appropriate visit methods.static MolecularSequence.Quality.Roc.Builder
builder()
boolean
equals(java.lang.Object obj)
java.util.List<Decimal>
getFMeasure()
Calculated fScore if the GQ score threshold was set to "score" field value.java.util.List<Integer>
getNumFN()
The number of false negatives if the GQ score threshold was set to "score" field value.java.util.List<Integer>
getNumFP()
The number of false positives if the GQ score threshold was set to "score" field value.java.util.List<Integer>
getNumTP()
The number of true positives if the GQ score threshold was set to "score" field value.java.util.List<Decimal>
getPrecision()
Calculated precision if the GQ score threshold was set to "score" field value.java.util.List<Integer>
getScore()
Invidual data point representing the GQ (genotype quality) score threshold.java.util.List<Decimal>
getSensitivity()
Calculated sensitivity if the GQ score threshold was set to "score" field value.boolean
hasChildren()
int
hashCode()
MolecularSequence.Quality.Roc.Builder
toBuilder()
Create a new Builder from the contents of this Element-
Methods inherited from class org.linuxforhealth.fhir.model.type.BackboneElement
getModifierExtension
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Methods inherited from class org.linuxforhealth.fhir.model.type.Element
as, getExtension, getId, hasValue, is
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Method Detail
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getScore
public java.util.List<Integer> getScore()
Invidual data point representing the GQ (genotype quality) score threshold.- Returns:
- An unmodifiable list containing immutable objects of type
Integer
that may be empty.
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getNumTP
public java.util.List<Integer> getNumTP()
The number of true positives if the GQ score threshold was set to "score" field value.- Returns:
- An unmodifiable list containing immutable objects of type
Integer
that may be empty.
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getNumFP
public java.util.List<Integer> getNumFP()
The number of false positives if the GQ score threshold was set to "score" field value.- Returns:
- An unmodifiable list containing immutable objects of type
Integer
that may be empty.
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getNumFN
public java.util.List<Integer> getNumFN()
The number of false negatives if the GQ score threshold was set to "score" field value.- Returns:
- An unmodifiable list containing immutable objects of type
Integer
that may be empty.
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getPrecision
public java.util.List<Decimal> getPrecision()
Calculated precision if the GQ score threshold was set to "score" field value.- Returns:
- An unmodifiable list containing immutable objects of type
Decimal
that may be empty.
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getSensitivity
public java.util.List<Decimal> getSensitivity()
Calculated sensitivity if the GQ score threshold was set to "score" field value.- Returns:
- An unmodifiable list containing immutable objects of type
Decimal
that may be empty.
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getFMeasure
public java.util.List<Decimal> getFMeasure()
Calculated fScore if the GQ score threshold was set to "score" field value.- Returns:
- An unmodifiable list containing immutable objects of type
Decimal
that may be empty.
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hasChildren
public boolean hasChildren()
- Overrides:
hasChildren
in classBackboneElement
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accept
public void accept(java.lang.String elementName, int elementIndex, Visitor visitor)
Description copied from interface:Visitable
Accept a Visitor and invoke the appropriate visit methods. A typical implementation would look like this:if (visitor.preVisit(this)) { visitor.visitStart(elementName, elementIndex, this); if (visitor.visit(elementName, elementIndex, this)) { // visit children } visitor.visitEnd(elementName, elementIndex, this); visitor.postVisit(this); }
- Specified by:
accept
in interfaceVisitable
- Specified by:
accept
in classAbstractVisitable
- Parameters:
elementName
- the name of the element in the context of this visitelementIndex
- the index of the element in a list or -1 if it is not contained within a Listvisitor
- the visitor to use
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equals
public boolean equals(java.lang.Object obj)
- Overrides:
equals
in classjava.lang.Object
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hashCode
public int hashCode()
- Overrides:
hashCode
in classjava.lang.Object
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toBuilder
public MolecularSequence.Quality.Roc.Builder toBuilder()
Description copied from class:Element
Create a new Builder from the contents of this Element- Specified by:
toBuilder
in classBackboneElement
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builder
public static MolecularSequence.Quality.Roc.Builder builder()
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