Class MolecularSequence.Quality.Roc

    • Method Detail

      • getScore

        public java.util.List<Integer> getScore()
        Invidual data point representing the GQ (genotype quality) score threshold.
        Returns:
        An unmodifiable list containing immutable objects of type Integer that may be empty.
      • getNumTP

        public java.util.List<Integer> getNumTP()
        The number of true positives if the GQ score threshold was set to "score" field value.
        Returns:
        An unmodifiable list containing immutable objects of type Integer that may be empty.
      • getNumFP

        public java.util.List<Integer> getNumFP()
        The number of false positives if the GQ score threshold was set to "score" field value.
        Returns:
        An unmodifiable list containing immutable objects of type Integer that may be empty.
      • getNumFN

        public java.util.List<Integer> getNumFN()
        The number of false negatives if the GQ score threshold was set to "score" field value.
        Returns:
        An unmodifiable list containing immutable objects of type Integer that may be empty.
      • getPrecision

        public java.util.List<Decimal> getPrecision()
        Calculated precision if the GQ score threshold was set to "score" field value.
        Returns:
        An unmodifiable list containing immutable objects of type Decimal that may be empty.
      • getSensitivity

        public java.util.List<Decimal> getSensitivity()
        Calculated sensitivity if the GQ score threshold was set to "score" field value.
        Returns:
        An unmodifiable list containing immutable objects of type Decimal that may be empty.
      • getFMeasure

        public java.util.List<Decimal> getFMeasure()
        Calculated fScore if the GQ score threshold was set to "score" field value.
        Returns:
        An unmodifiable list containing immutable objects of type Decimal that may be empty.
      • accept

        public void accept​(java.lang.String elementName,
                           int elementIndex,
                           Visitor visitor)
        Description copied from interface: Visitable
        Accept a Visitor and invoke the appropriate visit methods. A typical implementation would look like this:
         if (visitor.preVisit(this)) {
             visitor.visitStart(elementName, elementIndex, this);
             if (visitor.visit(elementName, elementIndex, this)) {
                 // visit children
             }
             visitor.visitEnd(elementName, elementIndex, this);
             visitor.postVisit(this);
         }
         
        Specified by:
        accept in interface Visitable
        Specified by:
        accept in class AbstractVisitable
        Parameters:
        elementName - the name of the element in the context of this visit
        elementIndex - the index of the element in a list or -1 if it is not contained within a List
        visitor - the visitor to use
      • equals

        public boolean equals​(java.lang.Object obj)
        Overrides:
        equals in class java.lang.Object
      • hashCode

        public int hashCode()
        Overrides:
        hashCode in class java.lang.Object